myRT

myRT report for GCA_003478265.1_ASM347826v1

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Seq: QUEX01000001.1 Ruminococcus sp. AM54-14NS AM54-14NS.Scaf1, whole genome shotgun sequence (244553 bp)
Overview 1 RT 1: 168087-170918 bp Neighborhood of RT #1 [168087, 171013] PRK08323 COG4603 RVT-GII GIIM Cytidylate_kin2 Feature: gene Location: 168087-168437 bp Feature: domain Description: PRK08323 Location: 168123-168432 bp Feature: domain Description: PRK08323 Location: 1 681 23-1 68432 bp Feature: gene Location: 168505-168711 bp Feature: domain Description: COG4603 Location: 168511-168655 bp Feature: domain Description: COG4603 Location: 1 6851 1 -1 68655 bp Feature: gene Location: 168866-170155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169157-169790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 691 57-1 69790 bp Feature: domain Description: GIIM Note: maturase Location: 169871-170087 bp Feature: domain Description: GIIM Note: maturase Location: 1 69871 -1 70087 bp Feature: gene Location: 170188-170697 bp Feature: gene Location: 170726-171013 bp Feature: domain Description: Cytidylate_kin2 Location: 170732-170918 bp Feature: domain Description: Cytidylate_kin2 Location: 1 70732-1 7091 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08323 (phenylhydantoinase; Validated), COG4603 (ABC-type uncharacterized transport system, permease component ), RVT-GII, GIIM (pfam08388), Cytidylate_kin2 (pfam13189)

Seq: QUEX01000116.1 Ruminococcus sp. AM54-14NS AM54-14NS.Scaf116, whole genome shotgun sequence (1085 bp)
Overview 1 RT 1: 3-1085 bp Neighborhood of RT #1 [3, 1084] RVT-GII Feature: gene Location: 3-140 bp Feature: gene Location: 180-323 bp Feature: gene Location: 332-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-1085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-1085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUEX01000123.1 Ruminococcus sp. AM54-14NS AM54-14NS.Scaf123, whole genome shotgun sequence (646 bp)
Overview 1 RT 1: 101-572 bp Neighborhood of RT #1 [101, 643] RVT-GII GIIM Feature: gene Location: 101-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107-287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107-287 bp Feature: domain Description: GIIM Note: maturase Location: 368-572 bp Feature: domain Description: GIIM Note: maturase Location: 3 68-572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUEX01000005.1 Ruminococcus sp. AM54-14NS AM54-14NS.Scaf5, whole genome shotgun sequence (158282 bp)
Overview 1 RT 1: 122460-136580 bp Neighborhood of RT #1 [122460, 136672] ArdC YodL DUF3849 LPD18 LPD16 LPD16 RVT_N RVT-GII YkfC COG4646 HepA YtxK COG4646 Feature: gene Location: 122460-127568 bp Feature: domain Description: ArdC Location: 122682-123273 bp Feature: domain Description: ArdC Location: 122682-123273 bp Feature: domain Description: YodL Location: 124500-124791 bp Feature: domain Description: YodL Location: 124 500-124 791 bp Feature: domain Description: DUF3849 Location: 124848-125223 bp Feature: domain Description: DUF384 9 Location: 124 84 8-125223 bp Feature: domain Description: LPD18 Location: 125262-125508 bp Feature: domain Description: LPD18 Location: 125262-125508 bp Feature: domain Description: LPD16 Location: 126018-126246 bp Feature: domain Description: LPD16 Location: 126018-12624 6 bp Feature: domain Description: LPD16 Location: 126372-126573 bp Feature: domain Description: LPD16 Location: 126372-126573 bp Feature: gene Location: 127608-128666 bp Feature: gene Location: 128667-130337 bp Feature: RT Description: RVT_N Location: 128712-128955 bp Feature: RT Description: RVT_N Location: 128712-128955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129000-129648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129000-12964 8 bp Feature: domain Description: YkfC Location: 129756-129951 bp Feature: domain Description: YkfC Location: 129756-129951 bp Feature: gene Location: 130915-131973 bp Feature: domain Description: COG4646 Location: 130918-131476 bp Feature: domain Description: COG4 64 6 Location: 130918-1314 76 bp Feature: domain Description: HepA Location: 131818-131950 bp Feature: domain Description: HepA Location: 131818-131950 bp Feature: gene Location: 131894-136672 bp Feature: domain Description: YtxK Location: 133910-134534 bp Feature: domain Description: YtxK Location: 133910-134 534 bp Feature: domain Description: COG4646 Location: 134597-136580 bp Feature: domain Description: COG4 64 6 Location: 134 597-136580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), YodL (pfam14191), DUF3849 (pfam12960), LPD18 (pfam18832), LPD16 (pfam18830), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG4646 (Adenine-specific DNA methylase, N12 class ), HepA (COG0553)
YtxK (COG0827)

Seq: QUEX01000090.1 Ruminococcus sp. AM54-14NS AM54-14NS.Scaf90, whole genome shotgun sequence (2708 bp)
Overview 1 RT 1: 147-2496 bp Neighborhood of RT #1 [147, 2496] RVT-GII Feature: gene Location: 147-2024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465 -1209 bp Feature: gene Location: 2176-2496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUEX01000094.1 Ruminococcus sp. AM54-14NS AM54-14NS.Scaf94, whole genome shotgun sequence (2089 bp)
Overview 1 RT 1: 172-1842 bp Neighborhood of RT #1 [172, 1842] RVT-GII GIIM Feature: gene Location: 172-1428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376 -1033 bp Feature: domain Description: GIIM Note: maturase Location: 1117-1330 bp Feature: domain Description: GIIM Note: maturase Location: 1117-1330 bp Feature: gene Location: 1459-1647 bp Feature: gene Location: 1699-1842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)