myRT

myRT report for GCA_003478285.1_ASM347828v1

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Seq: QUEZ01000001.1 Clostridium sp. AM51-4 AM51-4.Scaf1, whole genome shotgun sequence (278956 bp)
Overview 1 RT 1: 99844-103740 bp Neighborhood of RT #1 [99844, 103740] RVT-DGRs Feature: gene Location: 99844-101163 bp Feature: gene Location: 101293-101421 bp Feature: gene Location: 101684-102763 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 101852-102413 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 01 852-1 0241 3 bp Feature: gene Location: 103189-103416 bp Feature: gene Location: 103468-103740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUEZ01000003.1 Clostridium sp. AM51-4 AM51-4.Scaf3, whole genome shotgun sequence (208994 bp)
Overview 1 RT 1: 103913-107174 bp Neighborhood of RT #1 [103913, 107323] FGE-sulfatase Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 103913-104797 bp Feature: domain Description: FGE-sulfatase Location: 103967-104294 bp Feature: domain Description: FGE-sulfatase Location: 103967-1042 94 bp Feature: gene Location: 104858-105262 bp Feature: domain Description: Avd_like Location: 104918-105254 bp Feature: domain Description: Avd_like Location: 104918-1052 54 bp Feature: gene Location: 105573-106457 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105786-106440 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105786-106440 bp Feature: gene Location: 106432-106686 bp Feature: gene Location: 106721-107323 bp Feature: domain Description: Phage_holin_4_1 Location: 106808-107174 bp Feature: domain Description: Phage_holin_4_1 Location: 106808-107174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: QUEZ01000037.1 Clostridium sp. AM51-4 AM51-4.Scaf37, whole genome shotgun sequence (25978 bp)
Overview 1 RT 1: 7671-11781 bp Neighborhood of RT #1 [7671, 11807] RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 7671-7859 bp Feature: gene Location: 7896-8054 bp Feature: gene Location: 8356-9633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8569-9187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8569-9187 bp Feature: domain Description: GIIM Note: maturase Location: 9247-9469 bp Feature: domain Description: GIIM Note: maturase Location: 9247-9469 bp Feature: gene Location: 9826-11049 bp Feature: domain Description: Phage_int_SAM_1 Location: 10222-10393 bp Feature: domain Description: Phage_int_SAM_1 Location: 10222-103 93 bp Feature: domain Description: INT_RitA_C_like Location: 10486-11020 bp Feature: domain Description: INT_RitA_C_like Location: 10486-11020 bp Feature: gene Location: 11046-11807 bp Feature: domain Description: INT_RitB_C_like Location: 11364-11781 bp Feature: domain Description: INT_RitB_C_like Location: 113 64-11781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188)

Seq: QUEZ01000048.1 Clostridium sp. AM51-4 AM51-4.Scaf48, whole genome shotgun sequence (9668 bp)
Overview 1 RT 1: 1-2541 bp Neighborhood of RT #1 [1, 2541] RVT-Retrons Feature: gene Location: 1-126 bp Feature: gene Location: 364-1476 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 520-1084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 520-1084 bp Feature: gene Location: 1658-1816 bp Feature: gene Location: 1837-2541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons