myRT

myRT report for GCA_003478325.1_ASM347832v1

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Seq: QUFA01000014.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf14, whole genome shotgun sequence (89695 bp)
Overview 1 RT 1: 6948-11292 bp Neighborhood of RT #1 [6948, 11292] DEDD_Tnp_IS110 Transposase_20 RVT-Retrons Feature: gene Location: 6948-8318 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 7092-7530 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 7092-7530 bp Feature: domain Description: Transposase_20 Location: 7827-8091 bp Feature: domain Description: Transposase_20 Location: 7827-8091 bp Feature: gene Location: 8523-8711 bp Feature: gene Location: 8810-9829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8960-9518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8960-951 8 bp Feature: gene Location: 9991-10911 bp Feature: gene Location: 11014-11292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-Retrons

Seq: QUFA01000030.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf30, whole genome shotgun sequence (60678 bp)
Overview 1 RT 1: 45314-48898 bp Neighborhood of RT #1 [45314, 48898] MATE_yoeA_like Lrp RVT-GII NADH_nitroreductase MATE_like_4 Feature: gene Location: 45314-46657 bp Feature: domain Description: MATE_yoeA_like Location: 45353-46622 bp Feature: domain Description: MATE_yoeA_like Location: 45353-4662 2 bp Feature: gene Location: 46876-47334 bp Feature: domain Description: Lrp Location: 46882-47314 bp Feature: domain Description: Lrp Location: 46882 -47314 bp Feature: gene Location: 47456-47614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47474-47591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47474-47591 bp Feature: gene Location: 47657-48523 bp Feature: domain Description: NADH_nitroreductase Location: 47846-47990 bp Feature: domain Description: NADH_nitroreductase Location: 47846-47990 bp Feature: domain Description: MATE_like_4 Location: 47996-48497 bp Feature: domain Description: MATE_like_4 Location: 47996-48497 bp Feature: gene Location: 48707-48898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_yoeA_like (cd13138), Lrp (COG1522), RVT-GII, NADH_nitroreductase, MATE_like_4 (cd13144)

Seq: QUFA01000031.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf31, whole genome shotgun sequence (58320 bp)
Overview 1 RT 1: 32747-37994 bp Neighborhood of RT #1 [32747, 38002] AgaS RVT-GII GIIM PurR DUF111 Feature: gene Location: 32747-33808 bp Feature: domain Description: AgaS Location: 32765-33785 bp Feature: domain Description: AgaS Location: 3 2765-3 3 785 bp Feature: gene Location: 33901-34071 bp Feature: gene Location: 34426-35730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34627-35245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4627-3 5245 bp Feature: domain Description: GIIM Note: maturase Location: 35299-35515 bp Feature: domain Description: GIIM Note: maturase Location: 3 5299-3 5515 bp Feature: gene Location: 35807-36865 bp Feature: domain Description: PurR Location: 35810-36821 bp Feature: domain Description: PurR Location: 3 5810-3 6821 bp Feature: gene Location: 37046-38002 bp Feature: domain Description: DUF111 Location: 37154-37994 bp Feature: domain Description: DUF111 Location: 3 7154-3 7994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AgaS (COG2222), RVT-GII, GIIM (pfam08388), PurR (COG1609), DUF111 (pfam01969)

Seq: QUFA01000036.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf36, whole genome shotgun sequence (46733 bp)
Overview 1 RT 1: 557-4827 bp Neighborhood of RT #1 [557, 4827] group_II_RT_mat RVT-GII GIIM RVT-GII Feature: gene Location: 557-727 bp Feature: gene Location: 819-1301 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 828-1203 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 828-1203 bp Feature: gene Location: 1427-2683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631-2288 bp Feature: domain Description: GIIM Note: maturase Location: 2372-2585 bp Feature: domain Description: GIIM Note: maturase Location: 2372-2585 bp Feature: gene Location: 2714-2902 bp Feature: gene Location: 2954-3097 bp Feature: gene Location: 3204-3989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3459-3960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 59-3960 bp Feature: gene Location: 4284-4613 bp Feature: gene Location: 4672-4827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: QUFA01000046.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf46, whole genome shotgun sequence (28448 bp)
Overview 1 RT 1: 3825-9484 bp Neighborhood of RT #1 [3825, 9489] RVT-GII GIIM COG5263 MurNAc-LAA NifX SlpA Feature: gene Location: 3825-5516 bp Feature: gene Location: 5685-5927 bp Feature: gene Location: 6035-7429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6353-6977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635 3-6977 bp Feature: domain Description: GIIM Note: maturase Location: 7034-7256 bp Feature: domain Description: GIIM Note: maturase Location: 7034-725 6 bp Feature: gene Location: 7586-8554 bp Feature: domain Description: COG5263 Location: 7697-7928 bp Feature: domain Description: COG5 263 Location: 7697-7928 bp Feature: domain Description: MurNAc-LAA Location: 7937-8537 bp Feature: domain Description: MurNAc-LAA Location: 7937-85 37 bp Feature: gene Location: 8626-9489 bp Feature: domain Description: NifX Location: 8629-8962 bp Feature: domain Description: NifX Location: 8629-8962 bp Feature: domain Description: SlpA Location: 9079-9484 bp Feature: domain Description: SlpA Location: 9079-9484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5263 (Glucan-binding domain (YG repeat) ), MurNAc-LAA (cl02713), NifX (COG1433), SlpA (COG1047)

Seq: QUFA01000067.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf67, whole genome shotgun sequence (8774 bp)
Overview 1 RT 1: 1923-8772 bp Neighborhood of RT #1 [1923, 8772] Nitroreductase_3 RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM Feature: gene Location: 1923-2441 bp Feature: domain Description: Nitroreductase_3 Location: 1935-2421 bp Feature: domain Description: Nitroreductase_3 Location: 1935-2421 bp Feature: gene Location: 2834-2962 bp Feature: gene Location: 3497-4285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3830-4217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3830-4217 bp Feature: gene Location: 4330-5343 bp Feature: domain Description: Phage_int_SAM_1 Location: 4384-4630 bp Feature: domain Description: Phage_int_SAM_1 Location: 4384-46 30 bp Feature: domain Description: INT_RitC_C_like Location: 4711-5257 bp Feature: domain Description: INT_RitC_C_like Location: 4711-5257 bp Feature: gene Location: 5324-6307 bp Feature: domain Description: INT_RitB_C_like Location: 5660-6245 bp Feature: domain Description: INT_RitB_C_like Location: 56 6 0-6 245 bp Feature: gene Location: 6300-7535 bp Feature: domain Description: Phage_int_SAM_1 Location: 6654-6876 bp Feature: domain Description: Phage_int_SAM_1 Location: 6 6 54-6 876 bp Feature: domain Description: INT_RitA_C_like Location: 6969-7509 bp Feature: domain Description: INT_RitA_C_like Location: 6 96 9-7509 bp Feature: gene Location: 7730-8359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7742-7997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7742-7997 bp Feature: domain Description: GIIM Note: maturase Location: 8060-8270 bp Feature: domain Description: GIIM Note: maturase Location: 806 0-8270 bp Feature: gene Location: 8611-8772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nitroreductase_3, RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), GIIM (pfam08388)

Seq: QUFA01000079.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf79, whole genome shotgun sequence (4839 bp)
Overview 1 RT 1: 1241-4520 bp Neighborhood of RT #1 [1241, 4837] RVT-GII MobA_MobL Feature: gene Location: 1241-1741 bp Feature: gene Location: 1837-2019 bp Feature: gene Location: 2232-3527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2487-3177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2487 -317 7 bp Feature: gene Location: 3791-4837 bp Feature: domain Description: MobA_MobL Location: 3842-4520 bp Feature: domain Description: MobA_MobL Location: 3842-4520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MobA_MobL (pfam03389)

Seq: QUFA01000081.1 Ruminococcus sp. AM50-15BH AM50-15BH.Scaf81, whole genome shotgun sequence (4024 bp)
Overview 1 RT 1: 26-3987 bp Neighborhood of RT #1 [26, 4022] AAA_10 RVT-GII AAA_10 Feature: gene Location: 26-865 bp Feature: domain Description: AAA_10 Location: 29-827 bp Feature: domain Description: AAA_10 Location: 29-8 27 bp Feature: gene Location: 1083-2909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1383-2082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138 3-208 2 bp Feature: gene Location: 3606-4022 bp Feature: domain Description: AAA_10 Location: 3801-3987 bp Feature: domain Description: AAA_10 Location: 38 01-398 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)