myRT

myRT report for GCA_003478355.1_ASM347835v1

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Seq: QUFC01000010.1 Lachnospiraceae bacterium AM48-27BH AM48-27BH.Scaf10, whole genome shotgun sequence (104502 bp)
Overview 1 RT 1: 39453-42046 bp Neighborhood of RT #1 [39453, 42051] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 39453-39668 bp Feature: domain Description: Phage_holin_Dp1 Location: 39462-39648 bp Feature: domain Description: Phage_holin_Dp1 Location: 39462-39648 bp Feature: gene Location: 39687-39989 bp Feature: gene Location: 40015-41211 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40210-40933 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4021 0-40933 bp Feature: gene Location: 41424-41840 bp Feature: gene Location: 41908-42051 bp Feature: domain Description: Phage_XkdX Location: 41929-42046 bp Feature: domain Description: Phage_XkdX Location: 41 929-42046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QUFC01000023.1 Lachnospiraceae bacterium AM48-27BH AM48-27BH.Scaf23, whole genome shotgun sequence (59355 bp)
Overview 1 RT 1: 9412-14777 bp Neighborhood of RT #1 [9412, 14809] DUF4366 DUF4315 RVT-GII Intron_maturas2 HNHc Spr Feature: gene Location: 9412-9819 bp Feature: domain Description: DUF4366 Location: 9595-9796 bp Feature: domain Description: DUF4366 Location: 9595-9796 bp Feature: gene Location: 9812-10048 bp Feature: domain Description: DUF4315 Location: 9824-10022 bp Feature: domain Description: DUF4315 Location: 982 4-1002 2 bp Feature: gene Location: 10263-12059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10530-11343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10530-11343 bp Feature: domain Description: Intron_maturas2 Location: 11418-11715 bp Feature: domain Description: Intron_maturas2 Location: 11418-11715 bp Feature: domain Description: HNHc Note: nucleases Location: 11880-12039 bp Feature: domain Description: HNHc Note: nucleases Location: 11880-12 039 bp Feature: gene Location: 12245-12484 bp Feature: gene Location: 12656-14809 bp Feature: domain Description: Spr Location: 14495-14777 bp Feature: domain Description: Spr Location: 14495-14777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791), DUF4366 (pfam14283), DUF4315 (pfam14193)

Seq: QUFC01000028.1 Lachnospiraceae bacterium AM48-27BH AM48-27BH.Scaf28, whole genome shotgun sequence (54389 bp)
Overview 1 RT 1: 4532-8146 bp Neighborhood of RT #1 [4532, 8148] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 4532-5020 bp Feature: domain Description: Phage_holin_4_1 Location: 4571-4931 bp Feature: domain Description: Phage_holin_4_1 Location: 4571-493 1 bp Feature: gene Location: 5017-5196 bp Feature: gene Location: 5221-6282 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5458-6079 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5458-6079 bp Feature: gene Location: 6609-6965 bp Feature: domain Description: Avd_like Location: 6639-6945 bp Feature: domain Description: Avd_like Location: 663 9-6945 bp Feature: gene Location: 7006-8148 bp Feature: domain Description: PHA00653 Location: 7129-8146 bp Feature: domain Description: PHA00653 Location: 7129-8146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: QUFC01000008.1 Lachnospiraceae bacterium AM48-27BH AM48-27BH.Scaf8, whole genome shotgun sequence (107530 bp)
Overview 1 RT 1: 72401-74951 bp Neighborhood of RT #1 [72401, 74983] XhlA RVT-DGRs Avd_like Feature: gene Location: 72401-72724 bp Feature: gene Location: 72762-73025 bp Feature: domain Description: XhlA Location: 72786-72990 bp Feature: domain Description: XhlA Location: 72786-72990 bp Feature: gene Location: 73082-74209 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73328-73985 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73328-73985 bp Feature: gene Location: 74228-74386 bp Feature: gene Location: 74564-74983 bp Feature: domain Description: Avd_like Location: 74645-74951 bp Feature: domain Description: Avd_like Location: 74 64 5-74 951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376)