myRT

myRT report for GCA_003478725.1_ASM347872v1

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Seq: QUFZ01000018.1 Clostridium sp. AF22-10 AF22-10.Scaf18, whole genome shotgun sequence (62160 bp)
Overview 1 RT 1: 4325-11478 bp Neighborhood of RT #1 [4325, 11753] DUF1430 RVT-GII GIIM TnpV VirD4 SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 4325-6289 bp Feature: domain Description: DUF1430 Location: 5966-6278 bp Feature: domain Description: DUF1 430 Location: 5966-6278 bp Feature: gene Location: 6299-6544 bp Feature: gene Location: 6550-7833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6760-7375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6760-7375 bp Feature: domain Description: GIIM Note: maturase Location: 7435-7651 bp Feature: domain Description: GIIM Note: maturase Location: 7435-7651 bp Feature: gene Location: 8362-8706 bp Feature: domain Description: TnpV Location: 8374-8698 bp Feature: domain Description: TnpV Location: 8374-8698 bp Feature: gene Location: 8703-11753 bp Feature: domain Description: VirD4 Location: 8976-9624 bp Feature: domain Description: VirD4 Location: 8976-9624 bp Feature: domain Description: SR_TndX_transposase Location: 9891-10320 bp Feature: domain Description: SR_TndX_transposase Location: 9891 -1 0320 bp Feature: domain Description: Recombinase Location: 10416-10776 bp Feature: domain Description: Recombinase Location: 1 041 6-1 0776 bp Feature: domain Description: Zn_ribbon_recom Location: 10821-11007 bp Feature: domain Description: Zn_ribbon_recom Location: 1 0821 -1 1 007 bp Feature: domain Description: DUF4368 Location: 11283-11478 bp Feature: domain Description: DUF4368 Location: 1 1 283-1 1 478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1430 (pfam07242), RVT-GII, GIIM (pfam08388), TnpV (pfam14198), VirD4 (COG3505), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: QUFZ01000003.1 Clostridium sp. AF22-10 AF22-10.Scaf3, whole genome shotgun sequence (246077 bp)
Overview 1 RT 1: 240845-243433 bp Neighborhood of RT #1 [240845, 243444] XhlA RVT-DGRs Avd_like Feature: gene Location: 240845-241201 bp Feature: gene Location: 241198-241434 bp Feature: domain Description: XhlA Location: 241279-241420 bp Feature: domain Description: XhlA Location: 2 412 79-2 4142 0 bp Feature: gene Location: 241690-242742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241900-242506 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 41900-2 42 506 bp Feature: gene Location: 242880-243035 bp Feature: gene Location: 243040-243444 bp Feature: domain Description: Avd_like Location: 243127-243433 bp Feature: domain Description: Avd_like Location: 2 4312 7-2 43433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376)