myRT

myRT report for GCA_003478845.1_ASM347884v1

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Seq: QUFJ01000013.1 Ruminococcus sp. AF25-28AC AF25-28AC.Scaf13, whole genome shotgun sequence (111792 bp)
Overview 1 RT 1: 31658-34295 bp Neighborhood of RT #1 [31658, 34438] RVT-GII GIIM HTH_XRE Feature: gene Location: 31658-31795 bp Feature: gene Location: 31937-32146 bp Feature: gene Location: 32238-33527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32529-33162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32529-331 62 bp Feature: domain Description: GIIM Note: maturase Location: 33243-33459 bp Feature: domain Description: GIIM Note: maturase Location: 33243-33459 bp Feature: gene Location: 33824-33997 bp Feature: gene Location: 34103-34438 bp Feature: domain Description: HTH_XRE Location: 34133-34295 bp Feature: domain Description: HTH_XRE Location: 341 33-34295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: QUFJ01000002.1 Ruminococcus sp. AF25-28AC AF25-28AC.Scaf2, whole genome shotgun sequence (357148 bp)
Overview 1 RT 1: 142037-145060 bp Neighborhood of RT #1 [142037, 145060] RVT-UG27 Feature: gene Location: 142037-142321 bp Feature: gene Location: 142335-142733 bp Feature: gene Location: 142743-144038 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 142932-143592 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 142 932 -143592 bp Feature: gene Location: 144041-144403 bp Feature: gene Location: 144413-145060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QUFJ01000032.1 Ruminococcus sp. AF25-28AC AF25-28AC.Scaf32, whole genome shotgun sequence (37299 bp)
Overview 1 RT 1: 103-3788 bp Neighborhood of RT #1 [103, 3788] AAA_18 HxlR RVT-GII ManC Feature: gene Location: 103-648 bp Feature: domain Description: AAA_18 Location: 124-502 bp Feature: domain Description: AAA_18 Location: 124-502 bp Feature: gene Location: 728-1096 bp Feature: domain Description: HxlR Location: 776-1091 bp Feature: domain Description: HxlR Location: 776-1091 bp Feature: gene Location: 1205-2611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595-2258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595-2258 bp Feature: gene Location: 2999-3457 bp Feature: domain Description: ManC Location: 3230-3422 bp Feature: domain Description: ManC Location: 3 23 0-3 422 bp Feature: gene Location: 3654-3788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_18 (pfam13238), HxlR (pfam01638), RVT-GII, ManC (COG0662)

Seq: QUFJ01000004.1 Ruminococcus sp. AF25-28AC AF25-28AC.Scaf4, whole genome shotgun sequence (212687 bp)
Overview 1 RT 1: 117764-121572 bp Neighborhood of RT #1 [117764, 121572] TnpV RVT-GII HNHc Feature: gene Location: 117764-118138 bp Feature: domain Description: TnpV Location: 117800-118130 bp Feature: domain Description: TnpV Location: 117800-118130 bp Feature: gene Location: 118119-118490 bp Feature: gene Location: 118567-120468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118885-119611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118885-119611 bp Feature: domain Description: HNHc Note: nucleases Location: 120190-120358 bp Feature: domain Description: HNHc Note: nucleases Location: 120190-120358 bp Feature: gene Location: 120809-121177 bp Feature: gene Location: 121237-121572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), RVT-GII, HNHc (smart00507)