myRT

myRT report for GCA_003478935.1_ASM347893v1

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Seq: QUFP01000103.1 Firmicutes bacterium AF25-13AC AF25-13AC.Scaf103, whole genome shotgun sequence (1544 bp)
Overview 1 RT 1: 76-790 bp Neighborhood of RT #1 [76, 1104] RVT-Retrons Feature: gene Location: 76-1104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229-790 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229-790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QUFP01000017.1 Firmicutes bacterium AF25-13AC AF25-13AC.Scaf17, whole genome shotgun sequence (84687 bp)
Overview 1 RT 1: 58178-62693 bp 2 RT 2: 82653-84206 bp Neighborhood of RT #1 [58178, 62693] RVT_N RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [82653, 84211] YdeE RVT-GII RVT-GII Feature: gene Location: 58178-58327 bp Feature: gene Location: 58611-58913 bp Feature: gene Location: 58917-60536 bp Feature: domain Description: RVT_N Location: 59064-59307 bp Feature: domain Description: RVT_N Location: 59064-59307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59367-60012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59367-60012 bp Feature: domain Description: GIIM Note: maturase Location: 60063-60297 bp Feature: domain Description: GIIM Note: maturase Location: 60063-602 97 bp Feature: gene Location: 61099-62496 bp Feature: domain Description: DDE_Tnp_IS66 Location: 61453-62320 bp Feature: domain Description: DDE_Tnp_IS66 Location: 61453-62 32 0 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 62341-62464 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 62 341-62 464 bp Feature: gene Location: 62520-62693 bp Feature: gene Location: 82653-82817 bp Feature: gene Location: 82882-83349 bp Feature: domain Description: YdeE Location: 82885-83344 bp Feature: domain Description: YdeE Location: 82 885-83344 bp Feature: gene Location: 83369-83734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83372-83597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83372 -83597 bp Feature: gene Location: 83756-84211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83855-84206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83855-842 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), YdeE (COG3708)

Seq: QUFP01000004.1 Firmicutes bacterium AF25-13AC AF25-13AC.Scaf4, whole genome shotgun sequence (142216 bp)
Overview 1 RT 1: 14455-18567 bp Neighborhood of RT #1 [14455, 18567] RVT-DGRs Feature: gene Location: 14455-14622 bp Feature: gene Location: 14652-14885 bp Feature: gene Location: 14938-16197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15223-15826 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15223 -15826 bp Feature: gene Location: 16181-16411 bp Feature: gene Location: 16549-18567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUFP01000077.1 Firmicutes bacterium AF25-13AC AF25-13AC.Scaf77, whole genome shotgun sequence (6745 bp)
Overview 1 RT 1: 4596-6285 bp Neighborhood of RT #1 [4596, 6698] RVT-UG26 Feature: gene Location: 4596-4766 bp Feature: gene Location: 4784-5239 bp Feature: gene Location: 5463-6698 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 5667-6285 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 5667-6285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26

Seq: QUFP01000081.1 Firmicutes bacterium AF25-13AC AF25-13AC.Scaf81, whole genome shotgun sequence (5634 bp)
Overview 1 RT 1: 619-4204 bp Neighborhood of RT #1 [619, 4266] RVT-CRISPR Cas1_I-II-III Cas1_I-II-III Feature: gene Location: 619-858 bp Feature: gene Location: 1159-1983 bp Feature: gene Location: 2204-3613 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2411-3014 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2411-3014 bp Feature: gene Location: 3682-3900 bp Feature: gene Location: 3907-4266 bp Feature: domain Description: Cas1_I-II-III Location: 3916-4045 bp Feature: domain Description: Cas1_I-II-III Location: 3916-4045 bp Feature: domain Description: Cas1_I-II-III Location: 4045-4204 bp Feature: domain Description: Cas1_I-II-III Location: 4045 -4204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)