myRT

myRT report for GCA_003478965.1_ASM347896v1

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Seq: QUGG01000021.1 Clostridium sp. AF20-17LB AF20-17LB.Scaf21, whole genome shotgun sequence (49810 bp)
Overview 1 RT 1: 3-5132 bp Neighborhood of RT #1 [3, 5155] COG3666 RVT-GII GIIM Lon ispD Feature: gene Location: 3-899 bp Feature: domain Description: COG3666 Location: 63-504 bp Feature: domain Description: COG3666 Location: 63-504 bp Feature: gene Location: 1131-2450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377-1992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 377-1 992 bp Feature: domain Description: GIIM Note: maturase Location: 2052-2280 bp Feature: domain Description: GIIM Note: maturase Location: 2052-2280 bp Feature: gene Location: 2944-4434 bp Feature: domain Description: Lon Location: 3484-4432 bp Feature: domain Description: Lon Location: 3484-4432 bp Feature: gene Location: 4421-5155 bp Feature: domain Description: ispD Location: 4436-5132 bp Feature: domain Description: ispD Location: 4436-51 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Lon (COG0466), COG3666 (Transposase )

Seq: QUGG01000003.1 Clostridium sp. AF20-17LB AF20-17LB.Scaf3, whole genome shotgun sequence (187926 bp)
Overview 1 RT 1: 123349-128063 bp Neighborhood of RT #1 [123349, 128080] FixB RVT-GII YfdV LysR LysR Feature: gene Location: 123349-124398 bp Feature: domain Description: FixB Location: 123373-124375 bp Feature: domain Description: FixB Location: 12 3373-12 4375 bp Feature: gene Location: 124485-124718 bp Feature: gene Location: 124981-125376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125299-125347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 52 99-12 5347 bp Feature: gene Location: 126001-126918 bp Feature: domain Description: YfdV Location: 126037-126910 bp Feature: domain Description: YfdV Location: 12 6037-12 6910 bp Feature: gene Location: 127016-128080 bp Feature: domain Description: LysR Location: 127019-127535 bp Feature: domain Description: LysR Location: 12 7019-12 7535 bp Feature: domain Description: LysR Location: 127706-128063 bp Feature: domain Description: LysR Location: 12 7706-12 8063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FixB (COG2025), RVT-GII, YfdV (COG0679), LysR (COG0583)

Seq: QUGG01000005.1 Clostridium sp. AF20-17LB AF20-17LB.Scaf5, whole genome shotgun sequence (187183 bp)
Overview 1 RT 1: 93178-103907 bp Neighborhood of RT #1 [93178, 103921] TnpV COG4646 RVT-GII Intron_maturas2 YtxK COG4646 Feature: gene Location: 93178-93552 bp Feature: domain Description: TnpV Location: 93214-93544 bp Feature: domain Description: TnpV Location: 93 214-93 544 bp Feature: gene Location: 93533-94594 bp Feature: domain Description: COG4646 Location: 93644-94061 bp Feature: domain Description: COG4646 Location: 93 644-94061 bp Feature: gene Location: 94591-96405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94855-95674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94855-95674 bp Feature: domain Description: Intron_maturas2 Location: 95743-96085 bp Feature: domain Description: Intron_maturas2 Location: 95743 -96085 bp Feature: gene Location: 96407-96544 bp Feature: gene Location: 96983-103921 bp Feature: domain Description: YtxK Location: 101081-101678 bp Feature: domain Description: YtxK Location: 101081-101678 bp Feature: domain Description: COG4646 Location: 101750-103907 bp Feature: domain Description: COG4646 Location: 101750-103 907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), YtxK (COG0827)