myRT

myRT report for GCA_003479065.1_ASM347906v1

Download annotations/find similar RTs

Seq: QUGM01000016.1 Ruminococcus sp. AF19-29 AF19-29.Scaf16, whole genome shotgun sequence (77898 bp)
Overview 1 RT 1: 56994-62674 bp Neighborhood of RT #1 [56994, 62901] AAA_15 TOPRIM_OLD RVT-Retrons DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 56994-58835 bp Feature: domain Description: AAA_15 Location: 56997-58197 bp Feature: domain Description: AAA_1 5 Location: 56997-581 97 bp Feature: domain Description: TOPRIM_OLD Location: 58389-58608 bp Feature: domain Description: TOPRIM_OLD Location: 58389-58608 bp Feature: gene Location: 58938-59858 bp Feature: gene Location: 60020-61039 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60170-60728 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 601 70-60728 bp Feature: gene Location: 61138-61326 bp Feature: gene Location: 61531-62901 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 61675-62113 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 61 675-621 1 3 bp Feature: domain Description: Transposase_20 Location: 62410-62674 bp Feature: domain Description: Transposase_20 Location: 6241 0-62674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons, DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: QUGM01000031.1 Ruminococcus sp. AF19-29 AF19-29.Scaf31, whole genome shotgun sequence (45808 bp)
Overview 1 RT 1: 17248-23507 bp Neighborhood of RT #1 [17248, 23590] VirD4 VirD4 Maff2 RVT-GII HNHc PrgI Feature: gene Location: 17248-19185 bp Feature: domain Description: VirD4 Location: 17509-17863 bp Feature: domain Description: VirD4 Location: 17509-17863 bp Feature: domain Description: VirD4 Location: 17941-19063 bp Feature: domain Description: VirD4 Location: 17941-19063 bp Feature: gene Location: 19333-19464 bp Feature: domain Description: Maff2 Location: 19336-19462 bp Feature: domain Description: Maff2 Location: 19336-19462 bp Feature: gene Location: 20169-22055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20502-21240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0502 -2 12 40 bp Feature: domain Description: HNHc Note: nucleases Location: 21777-21939 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1777-2 1939 bp Feature: gene Location: 22328-23197 bp Feature: gene Location: 23222-23590 bp Feature: domain Description: PrgI Location: 23240-23507 bp Feature: domain Description: PrgI Location: 2 32 40-2 3507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), PrgI (pfam12666)

Seq: QUGM01000006.1 Ruminococcus sp. AF19-29 AF19-29.Scaf6, whole genome shotgun sequence (141280 bp)
Overview 1 RT 1: 96633-101363 bp Neighborhood of RT #1 [96633, 101425] YodL LPD18 DUF4316 RVT-GII GIIM PBECR4 Feature: gene Location: 96633-97484 bp Feature: domain Description: YodL Location: 96648-96945 bp Feature: domain Description: YodL Location: 96648-96945 bp Feature: domain Description: LPD18 Location: 96975-97215 bp Feature: domain Description: LPD18 Location: 96975-97215 bp Feature: domain Description: DUF4316 Location: 97269-97398 bp Feature: domain Description: DUF43 16 Location: 97269-973 98 bp Feature: gene Location: 97767-97967 bp Feature: gene Location: 98059-99348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98350-98983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983 50-98983 bp Feature: domain Description: GIIM Note: maturase Location: 99064-99289 bp Feature: domain Description: GIIM Note: maturase Location: 99064-99289 bp Feature: gene Location: 99537-100712 bp Feature: gene Location: 100805-101425 bp Feature: domain Description: PBECR4 Location: 100841-101363 bp Feature: domain Description: PBECR4 Location: 100841-1013 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBECR4 (pfam18813), YodL (pfam14191), LPD18 (pfam18832), DUF4316 (pfam14195), RVT-GII, GIIM (pfam08388)

Seq: QUGM01000073.1 Ruminococcus sp. AF19-29 AF19-29.Scaf73, whole genome shotgun sequence (6901 bp)
Overview 1 RT 1: 2927-6800 bp Neighborhood of RT #1 [2927, 6800] NifX SlpA COG5263 MurNAc-LAA RVT-GII GIIM Feature: gene Location: 2927-3790 bp Feature: domain Description: NifX Location: 2930-3263 bp Feature: domain Description: NifX Location: 2930-3263 bp Feature: domain Description: SlpA Location: 3380-3785 bp Feature: domain Description: SlpA Location: 3380-3785 bp Feature: gene Location: 3863-4831 bp Feature: domain Description: COG5263 Location: 3974-4205 bp Feature: domain Description: COG5263 Location: 3974 -4 205 bp Feature: domain Description: MurNAc-LAA Location: 4214-4814 bp Feature: domain Description: MurNAc-LAA Location: 4 214 -4 814 bp Feature: gene Location: 4988-6382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5306-5930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5306-5930 bp Feature: domain Description: GIIM Note: maturase Location: 5987-6209 bp Feature: domain Description: GIIM Note: maturase Location: 5987-6209 bp Feature: gene Location: 6492-6800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NifX (COG1433), SlpA (COG1047), COG5263 (Glucan-binding domain (YG repeat) ), MurNAc-LAA (cl02713), RVT-GII, GIIM (pfam08388)

Seq: QUGM01000078.1 Ruminococcus sp. AF19-29 AF19-29.Scaf78, whole genome shotgun sequence (5391 bp)
Overview 1 RT 1: 240-4510 bp Neighborhood of RT #1 [240, 4510] group_II_RT_mat RVT-GII GIIM RVT-GII Feature: gene Location: 240-410 bp Feature: gene Location: 502-984 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 511-886 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5 11-886 bp Feature: gene Location: 1110-2366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1314-1971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1314-1971 bp Feature: domain Description: GIIM Note: maturase Location: 2055-2268 bp Feature: domain Description: GIIM Note: maturase Location: 205 5 -2268 bp Feature: gene Location: 2397-2585 bp Feature: gene Location: 2637-2780 bp Feature: gene Location: 2887-3672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3142-3643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3142-3643 bp Feature: gene Location: 3967-4296 bp Feature: gene Location: 4355-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: QUGM01000008.1 Ruminococcus sp. AF19-29 AF19-29.Scaf8, whole genome shotgun sequence (126350 bp)
Overview 1 RT 1: 114382-117214 bp Neighborhood of RT #1 [114382, 117309] PRK08323 COG4603 RVT-GII GIIM Cytidylate_kin2 Feature: gene Location: 114382-114774 bp Feature: domain Description: PRK08323 Location: 114433-114769 bp Feature: domain Description: PRK08323 Location: 114433-11476 9 bp Feature: gene Location: 114801-115007 bp Feature: domain Description: COG4603 Location: 114807-114951 bp Feature: domain Description: COG46 03 Location: 114807-114951 bp Feature: gene Location: 115162-116451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115453-116086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115453-116 086 bp Feature: domain Description: GIIM Note: maturase Location: 116167-116383 bp Feature: domain Description: GIIM Note: maturase Location: 116 16 7-116 383 bp Feature: gene Location: 116484-116993 bp Feature: gene Location: 117022-117309 bp Feature: domain Description: Cytidylate_kin2 Location: 117028-117214 bp Feature: domain Description: Cytidylate_kin2 Location: 117028-117214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08323 (phenylhydantoinase; Validated), COG4603 (ABC-type uncharacterized transport system, permease component ), RVT-GII, GIIM (pfam08388), Cytidylate_kin2 (pfam13189)