myRT

myRT report for GCA_003479185.1_ASM347918v1

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Seq: QUGU01000001.1 Blautia sp. AF17-9LB AF17-9LB.Scaf1, whole genome shotgun sequence (427431 bp)
Overview 1 RT 1: 186404-191229 bp 2 RT 2: 382167-385378 bp Neighborhood of RT #1 [186404, 191243] VirD4 RVT_N RVT-GII GIIM VirD4 Maff2 Neighborhood of RT #2 [382167, 385378] Phage_XkdX RVT-DGRs Feature: gene Location: 186404-186574 bp Feature: gene Location: 186791-187447 bp Feature: domain Description: VirD4 Location: 187025-187439 bp Feature: domain Description: VirD4 Location: 1 87025-1 87439 bp Feature: gene Location: 188030-189694 bp Feature: RT Description: RVT_N Location: 188075-188318 bp Feature: RT Description: RVT_N Location: 1 88075-1 8831 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188363-189014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88363-1 8901 4 bp Feature: domain Description: GIIM Note: maturase Location: 189065-189299 bp Feature: domain Description: GIIM Note: maturase Location: 1 89065-1 89299 bp Feature: gene Location: 189838-191007 bp Feature: domain Description: VirD4 Location: 189850-190837 bp Feature: domain Description: VirD4 Location: 1 89850-1 90837 bp Feature: gene Location: 191091-191243 bp Feature: domain Description: Maff2 Location: 191106-191229 bp Feature: domain Description: Maff2 Location: 1 91 1 06-1 91 229 bp Feature: gene Location: 382167-382316 bp Feature: domain Description: Phage_XkdX Location: 382173-382308 bp Feature: domain Description: Phage_XkdX Location: 3821 73-382308 bp Feature: gene Location: 382332-382529 bp Feature: gene Location: 382555-383718 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 382768-383395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 382768-383395 bp Feature: gene Location: 383871-384005 bp Feature: gene Location: 384101-385378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Maff2 (pfam12750), Phage_XkdX (pfam09693), RVT-DGRs

Seq: QUGU01000002.1 Blautia sp. AF17-9LB AF17-9LB.Scaf2, whole genome shotgun sequence (415294 bp)
Overview 1 RT 1: 197539-208286 bp Neighborhood of RT #1 [197539, 208327] TTRAP YtxK COG4646 RVT-GII HNHc COG4646 KOG0390 MobC Feature: gene Location: 197539-197745 bp Feature: domain Description: TTRAP Location: 197548-197737 bp Feature: domain Description: TTRAP Location: 197548-197737 bp Feature: gene Location: 197768-203242 bp Feature: domain Description: YtxK Location: 200399-201149 bp Feature: domain Description: YtxK Location: 2 00399-2 01149 bp Feature: domain Description: COG4646 Location: 201218-203228 bp Feature: domain Description: COG4646 Location: 2 012 18-2 032 2 8 bp Feature: gene Location: 203941-205857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204265-204979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 042 65-2 04979 bp Feature: domain Description: HNHc Note: nucleases Location: 205609-205780 bp Feature: domain Description: HNHc Note: nucleases Location: 2 05609-2 05780 bp Feature: gene Location: 206067-207998 bp Feature: domain Description: COG4646 Location: 206079-206649 bp Feature: domain Description: COG4646 Location: 2 06079-2 06649 bp Feature: domain Description: KOG0390 Location: 206919-207177 bp Feature: domain Description: KOG0390 Location: 2 06919-2 07177 bp Feature: gene Location: 207995-208327 bp Feature: domain Description: MobC Location: 208175-208286 bp Feature: domain Description: MobC Location: 2 08175-2 082 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TTRAP (pfam14203), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HNHc (smart00507), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), MobC (pfam05713)

Seq: QUGU01000035.1 Blautia sp. AF17-9LB AF17-9LB.Scaf35, whole genome shotgun sequence (4003 bp)
Overview 1 RT 1: 2-3746 bp Neighborhood of RT #1 [2, 3913] RVT_N RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 2-289 bp Feature: gene Location: 892-2400 bp Feature: RT Description: RVT_N Location: 949-1192 bp Feature: RT Description: RVT_N Location: 949-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1252-1897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1252-1897 bp Feature: domain Description: GIIM Note: maturase Location: 1948-2182 bp Feature: domain Description: GIIM Note: maturase Location: 1948-2182 bp Feature: gene Location: 2419-2643 bp Feature: gene Location: 2630-3913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2840-3455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2840-3 455 bp Feature: domain Description: GIIM Note: maturase Location: 3515-3746 bp Feature: domain Description: GIIM Note: maturase Location: 3 515-3 746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: QUGU01000039.1 Blautia sp. AF17-9LB AF17-9LB.Scaf39, whole genome shotgun sequence (2792 bp)
Overview 1 RT 1: 303-2520 bp Neighborhood of RT #1 [303, 2630] RVT-GII HNHc Feature: gene Location: 303-551 bp Feature: gene Location: 750-2630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1083-1800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1083-1800 bp Feature: domain Description: HNHc Note: nucleases Location: 2382-2520 bp Feature: domain Description: HNHc Note: nucleases Location: 2382-2520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QUGU01000004.1 Blautia sp. AF17-9LB AF17-9LB.Scaf4, whole genome shotgun sequence (262306 bp)
Overview 1 RT 1: 77816-83040 bp Neighborhood of RT #1 [77816, 83040] REC RVT-GII Feature: gene Location: 77816-78208 bp Feature: domain Description: REC Location: 77942-78200 bp Feature: domain Description: REC Location: 77942-78200 bp Feature: gene Location: 78259-80322 bp Feature: gene Location: 80829-81689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81084-81543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81084-815 43 bp Feature: gene Location: 81723-81857 bp Feature: gene Location: 82078-83040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-GII

Seq: QUGU01000040.1 Blautia sp. AF17-9LB AF17-9LB.Scaf40, whole genome shotgun sequence (2589 bp)
Overview 1 RT 1: 105-2398 bp Neighborhood of RT #1 [105, 2398] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 9-1200 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: gene Location: 2183-2398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUGU01000043.1 Blautia sp. AF17-9LB AF17-9LB.Scaf43, whole genome shotgun sequence (1899 bp)
Overview 1 RT 1: 195-1896 bp Neighborhood of RT #1 [195, 1896] RVT-GII GIIM Feature: gene Location: 195-425 bp Feature: gene Location: 427-1704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-1255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-1255 bp Feature: domain Description: GIIM Note: maturase Location: 1321-1543 bp Feature: domain Description: GIIM Note: maturase Location: 1321-1543 bp Feature: gene Location: 1741-1896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUGU01000005.1 Blautia sp. AF17-9LB AF17-9LB.Scaf5, whole genome shotgun sequence (244461 bp)
Overview 1 RT 1: 120786-127087 bp Neighborhood of RT #1 [120786, 127341] RVT-GII GIIM HNH_4 Feature: gene Location: 120786-121028 bp Feature: gene Location: 121163-124867 bp Feature: gene Location: 125026-125868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125179-125509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125179-125509 bp Feature: domain Description: GIIM Note: maturase Location: 125569-125794 bp Feature: domain Description: GIIM Note: maturase Location: 125569-125794 bp Feature: gene Location: 125965-126114 bp Feature: gene Location: 126250-127341 bp Feature: domain Description: HNH_4 Location: 126967-127087 bp Feature: domain Description: HNH_4 Location: 126967-12708 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH_4 (pfam13395)