myRT

myRT report for GCA_003479325.1_ASM347932v1

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Seq: QUGS01000016.1 Clostridiaceae bacterium AF18-31LB AF18-31LB.Scaf16, whole genome shotgun sequence (48369 bp)
Overview 1 RT 1: 2934-7446 bp Neighborhood of RT #1 [2934, 7457] CcmA NosY RVT-GII GIIM ZnuB Feature: gene Location: 2934-3857 bp Feature: domain Description: CcmA Location: 2946-3837 bp Feature: domain Description: CcmA Location: 2946-3837 bp Feature: gene Location: 3850-4557 bp Feature: domain Description: NosY Location: 3892-4432 bp Feature: domain Description: NosY Location: 3892-4432 bp Feature: gene Location: 5214-5876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5250-5418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5250-541 8 bp Feature: domain Description: GIIM Note: maturase Location: 5478-5697 bp Feature: domain Description: GIIM Note: maturase Location: 5478-5697 bp Feature: gene Location: 5980-6609 bp Feature: gene Location: 6606-7457 bp Feature: domain Description: ZnuB Location: 6630-7446 bp Feature: domain Description: ZnuB Location: 6630-7446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), NosY (COG1277), RVT-GII, GIIM (pfam08388), ZnuB (COG1108)

Seq: QUGS01000018.1 Clostridiaceae bacterium AF18-31LB AF18-31LB.Scaf18, whole genome shotgun sequence (34659 bp)
Overview 1 RT 1: 4391-8006 bp Neighborhood of RT #1 [4391, 8008] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 4391-4879 bp Feature: domain Description: Phage_holin_4_1 Location: 4430-4790 bp Feature: domain Description: Phage_holin_4_1 Location: 4430-4790 bp Feature: gene Location: 4876-5055 bp Feature: gene Location: 5080-6141 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5317-5938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5317-5938 bp Feature: gene Location: 6468-6824 bp Feature: domain Description: Avd_like Location: 6498-6804 bp Feature: domain Description: Avd_like Location: 6498-6804 bp Feature: gene Location: 6866-8008 bp Feature: domain Description: PHA00653 Location: 6989-8006 bp Feature: domain Description: PHA00653 Location: 6989-8006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: QUGS01000034.1 Clostridiaceae bacterium AF18-31LB AF18-31LB.Scaf34, whole genome shotgun sequence (2792 bp)
Overview 1 RT 1: 1-2280 bp Neighborhood of RT #1 [1, 2675] TraG_VirD4 RVT_N RVT-GII GIIM Feature: gene Location: 1-429 bp Feature: domain Description: TraG_VirD4 Location: 136-313 bp Feature: domain Description: TraG_VirD4 Location: 13 6-3 13 bp Feature: gene Location: 1011-2675 bp Feature: domain Description: RVT_N Location: 1056-1299 bp Feature: domain Description: RVT_N Location: 1056-1299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1344-1995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 44-1995 bp Feature: domain Description: GIIM Note: maturase Location: 2046-2280 bp Feature: domain Description: GIIM Note: maturase Location: 2046-2280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QUGS01000038.1 Clostridiaceae bacterium AF18-31LB AF18-31LB.Scaf38, whole genome shotgun sequence (1916 bp)
Overview 1 RT 1: 81-1741 bp Neighborhood of RT #1 [81, 1741] RVT-GII GIIM Feature: gene Location: 81-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 32-1053 bp Feature: domain Description: GIIM Note: maturase Location: 1104-1314 bp Feature: domain Description: GIIM Note: maturase Location: 1104 -1314 bp Feature: gene Location: 1499-1741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUGS01000006.1 Clostridiaceae bacterium AF18-31LB AF18-31LB.Scaf6, whole genome shotgun sequence (268517 bp)
Overview 1 RT 1: 3545-8805 bp Neighborhood of RT #1 [3545, 8807] RVT-GII GIIM leuS Feature: gene Location: 3545-3916 bp Feature: gene Location: 4189-4440 bp Feature: gene Location: 4538-5827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4829-5462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4829-5 462 bp Feature: domain Description: GIIM Note: maturase Location: 5546-5768 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 46-5 768 bp Feature: gene Location: 5945-6100 bp Feature: gene Location: 6405-8807 bp Feature: domain Description: leuS Location: 6411-8805 bp Feature: domain Description: leuS Location: 6411-8805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), leuS (PRK12300)