myRT

myRT report for GCA_003479375.1_ASM347937v1

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Seq: QUHA01000013.1 Bacteroides sp. AF16-49 AF16-49.Scaf13, whole genome shotgun sequence (124787 bp)
Overview 1 RT 1: 104868-112985 bp Neighborhood of RT #1 [104868, 112985] N6_Mtase COG4646 RVT_N RVT-GII GIIM Feature: gene Location: 104868-105152 bp Feature: gene Location: 105192-109229 bp Feature: domain Description: N6_Mtase Location: 105714-106146 bp Feature: domain Description: N6_Mtase Location: 1 0571 4-1 061 46 bp Feature: domain Description: COG4646 Location: 106668-108612 bp Feature: domain Description: COG4646 Location: 1 06668-1 0861 2 bp Feature: gene Location: 109886-111553 bp Feature: domain Description: RVT_N Location: 109940-110183 bp Feature: domain Description: RVT_N Location: 1 09940-1 1 01 83 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110228-110876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0228-1 1 0876 bp Feature: domain Description: GIIM Note: maturase Location: 110930-111161 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 0930-1 1 1 1 61 bp Feature: gene Location: 111507-112640 bp Feature: gene Location: 112773-112985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QUHA01000017.1 Bacteroides sp. AF16-49 AF16-49.Scaf17, whole genome shotgun sequence (99803 bp)
Overview 1 RT 1: 20197-26592 bp Neighborhood of RT #1 [20197, 26621] DUF5106 Thioredoxin_8 RVT-UG17 BACON Fib_succ_major Mfa2 Feature: gene Location: 20197-20685 bp Feature: gene Location: 20696-21709 bp Feature: domain Description: DUF5106 Location: 20852-21287 bp Feature: domain Description: DUF5106 Location: 2 0852 -2 12 87 bp Feature: domain Description: Thioredoxin_8 Location: 21368-21653 bp Feature: domain Description: Thioredoxin_8 Location: 2 1368-2 1653 bp Feature: gene Location: 21721-22233 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 21916-22165 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 1916-2 2 165 bp Feature: gene Location: 22504-25623 bp Feature: domain Description: BACON Location: 23920-24097 bp Feature: domain Description: BACON Location: 2 392 0-2 4097 bp Feature: domain Description: Fib_succ_major Location: 24799-25618 bp Feature: domain Description: Fib_succ_major Location: 2 4799-2 5618 bp Feature: gene Location: 25650-26621 bp Feature: domain Description: Mfa2 Location: 25743-26592 bp Feature: domain Description: Mfa2 Location: 2 5743-2 6592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), RVT-UG17, BACON (pfam13004), Fib_succ_major (TIGR02145), Mfa2 (pfam08842)

Seq: QUHA01000029.1 Bacteroides sp. AF16-49 AF16-49.Scaf29, whole genome shotgun sequence (48446 bp)
Overview 1 RT 1: 43579-48308 bp Neighborhood of RT #1 [43579, 48331] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 43579-43926 bp Feature: domain Description: DUF4133 Location: 43597-43867 bp Feature: domain Description: DUF413 3 Location: 43 597-43 867 bp Feature: gene Location: 43923-45863 bp Feature: domain Description: Bac_Flav_CT_G Location: 43926-45846 bp Feature: domain Description: Bac_Flav_CT_G Location: 43 926-45846 bp Feature: gene Location: 46523-48331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46787-47609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46787-47609 bp Feature: domain Description: Intron_maturas2 Location: 47720-47987 bp Feature: domain Description: Intron_maturas2 Location: 47720-47987 bp Feature: domain Description: HNHc Note: nucleases Location: 48161-48308 bp Feature: domain Description: HNHc Note: nucleases Location: 48161-483 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUHA01000031.1 Bacteroides sp. AF16-49 AF16-49.Scaf31, whole genome shotgun sequence (46123 bp)
Overview 1 RT 1: 12194-16406 bp Neighborhood of RT #1 [12194, 16406] RteC HTH_17 RVT-GII Intron_maturas2 Feature: gene Location: 12194-12589 bp Feature: domain Description: RteC Location: 12290-12563 bp Feature: domain Description: RteC Location: 12290-12563 bp Feature: gene Location: 12719-12976 bp Feature: domain Description: HTH_17 Location: 12845-12965 bp Feature: domain Description: HTH_17 Location: 1284 5-12965 bp Feature: gene Location: 13364-15334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13793-14618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13793-14 618 bp Feature: domain Description: Intron_maturas2 Location: 14732-15014 bp Feature: domain Description: Intron_maturas2 Location: 14 732-15014 bp Feature: gene Location: 15372-15536 bp Feature: gene Location: 15822-16406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RteC (pfam09357), HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QUHA01000054.1 Bacteroides sp. AF16-49 AF16-49.Scaf54, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 62-2331 bp Neighborhood of RT #1 [62, 2331] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 62-1885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-1148 bp Feature: domain Description: Intron_maturas2 Location: 1322-1562 bp Feature: domain Description: Intron_maturas2 Location: 1322-15 62 bp Feature: domain Description: HNHc Note: nucleases Location: 1676-1847 bp Feature: domain Description: HNHc Note: nucleases Location: 1676-1847 bp Feature: gene Location: 2143-2331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUHA01000006.1 Bacteroides sp. AF16-49 AF16-49.Scaf6, whole genome shotgun sequence (226612 bp)
Overview 1 RT 1: 113674-116882 bp Neighborhood of RT #1 [113674, 116882] RVT-UG27 Feature: gene Location: 113674-113952 bp Feature: gene Location: 113982-114248 bp Feature: gene Location: 114298-115560 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 114490-115126 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 114490-115126 bp Feature: gene Location: 115553-116221 bp Feature: gene Location: 116235-116882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QUHA01000007.1 Bacteroides sp. AF16-49 AF16-49.Scaf7, whole genome shotgun sequence (216200 bp)
Overview 1 RT 1: 128049-134047 bp Neighborhood of RT #1 [128049, 134047] RVT-UG8 RVT-UG3 Feature: gene Location: 128049-128486 bp Feature: gene Location: 128865-129038 bp Feature: gene Location: 129086-131278 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 129701-130151 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1297 01-130151 bp Feature: gene Location: 131265-132728 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 131715-132228 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1317 15-132228 bp Feature: gene Location: 132779-132937 bp Feature: gene Location: 133133-134047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3