myRT

myRT report for GCA_003479405.1_ASM347940v1

Download annotations/find similar RTs

Seq: QUHB01000002.1 Eubacterium sp. AF16-48 AF16-48.Scaf2, whole genome shotgun sequence (467980 bp)
Overview 1 RT 1: 88058-91907 bp Neighborhood of RT #1 [88058, 91927] Alanine_zipper RVT-DGRs Phage_XkdX Feature: gene Location: 88058-88489 bp Feature: domain Description: Alanine_zipper Location: 88277-88388 bp Feature: domain Description: Alanine_zipper Location: 88277-88388 bp Feature: gene Location: 88493-89788 bp Feature: gene Location: 90153-91538 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90366-91110 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90366-91 1 1 0 bp Feature: gene Location: 91447-91773 bp Feature: gene Location: 91775-91927 bp Feature: domain Description: Phage_XkdX Location: 91796-91907 bp Feature: domain Description: Phage_XkdX Location: 91 796-91 907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alanine_zipper (pfam11839), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QUHB01000004.1 Eubacterium sp. AF16-48 AF16-48.Scaf4, whole genome shotgun sequence (234806 bp)
Overview 1 RT 1: 95738-103702 bp Neighborhood of RT #1 [95738, 103713] NlpD Spr RVT-GII HNHc TraC-F-type Feature: gene Location: 95738-98416 bp Feature: domain Description: NlpD Location: 97571-97931 bp Feature: domain Description: NlpD Location: 97571-97931 bp Feature: domain Description: Spr Location: 98051-98393 bp Feature: domain Description: Spr Location: 98051-98393 bp Feature: gene Location: 98472-98756 bp Feature: gene Location: 98845-100728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99181-99898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99181-99898 bp Feature: domain Description: HNHc Note: nucleases Location: 100480-100618 bp Feature: domain Description: HNHc Note: nucleases Location: 100480-100618 bp Feature: gene Location: 100927-101175 bp Feature: gene Location: 101461-103713 bp Feature: domain Description: TraC-F-type Location: 102013-103702 bp Feature: domain Description: TraC-F-type Location: 102 013-103702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), NlpD (COG0739), Spr (COG0791), RVT-GII, HNHc (smart00507)

Seq: QUHB01000007.1 Eubacterium sp. AF16-48 AF16-48.Scaf7, whole genome shotgun sequence (168160 bp)
Overview 1 RT 1: 10661-15888 bp Neighborhood of RT #1 [10661, 15917] WYL RVT-GII GIIM SLATT_4 Feature: gene Location: 10661-11773 bp Feature: gene Location: 11862-13085 bp Feature: domain Description: WYL Location: 12447-13068 bp Feature: domain Description: WYL Location: 12447-13 068 bp Feature: gene Location: 13287-14570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13497-14112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 497-14112 bp Feature: domain Description: GIIM Note: maturase Location: 14172-14400 bp Feature: domain Description: GIIM Note: maturase Location: 14172-14400 bp Feature: gene Location: 14557-14700 bp Feature: gene Location: 15390-15917 bp Feature: domain Description: SLATT_4 Location: 15408-15888 bp Feature: domain Description: SLATT_4 Location: 15408-15888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), RVT-GII, GIIM (pfam08388), SLATT_4 (pfam18186)