myRT

myRT report for GCA_003479425.1_ASM347942v1

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Seq: QUHC01000011.1 Odoribacter sp. AF15-53 AF15-53.Scaf11, whole genome shotgun sequence (134007 bp)
Overview 1 RT 1: 5488-10603 bp Neighborhood of RT #1 [5488, 10603] KOG3824 VirE_N RVT-UG28b HTH_36 HTH_36 Feature: gene Location: 5488-6249 bp Feature: domain Description: KOG3824 Location: 5515-6238 bp Feature: domain Description: KOG3824 Location: 551 5-6238 bp Feature: gene Location: 6283-7326 bp Feature: domain Description: VirE_N Location: 6499-6868 bp Feature: domain Description: VirE_N Location: 6499-6868 bp Feature: gene Location: 7472-9229 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 7928-8666 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 7928-8666 bp Feature: gene Location: 9231-10142 bp Feature: domain Description: HTH_36 Location: 9294-9456 bp Feature: domain Description: HTH_36 Location: 9294-9456 bp Feature: domain Description: HTH_36 Location: 9621-9723 bp Feature: domain Description: HTH_36 Location: 9621 -9723 bp Feature: gene Location: 10412-10603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3824 (KOG3824, Huntingtin interacting protein HYPE ), VirE_N (pfam08800), RVT-UG28b, HTH_36 (pfam13730)

Seq: QUHC01000009.1 Odoribacter sp. AF15-53 AF15-53.Scaf9, whole genome shotgun sequence (143730 bp)
Overview 1 RT 1: 10170-19382 bp Neighborhood of RT #1 [10170, 19393] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 10170-10910 bp Feature: gene Location: 11056-11358 bp Feature: domain Description: DUF4134 Location: 11086-11353 bp Feature: domain Description: DUF4134 Location: 11086-11353 bp Feature: gene Location: 11993-13810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12257-13079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 57-13079 bp Feature: domain Description: Intron_maturas2 Location: 13154-13481 bp Feature: domain Description: Intron_maturas2 Location: 13154-13481 bp Feature: domain Description: HNHc Note: nucleases Location: 13634-13784 bp Feature: domain Description: HNHc Note: nucleases Location: 13634-13784 bp Feature: gene Location: 13720-14193 bp Feature: domain Description: DUF4133 Location: 13924-14152 bp Feature: domain Description: DUF4133 Location: 1392 4-14152 bp Feature: gene Location: 14190-15128 bp Feature: domain Description: Bac_Flav_CT_G Location: 14193-15114 bp Feature: domain Description: Bac_Flav_CT_G Location: 14193-15114 bp Feature: gene Location: 15307-15456 bp Feature: gene Location: 15712-17373 bp Feature: domain Description: RVT_N Location: 15766-16009 bp Feature: domain Description: RVT_N Location: 15766-16009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16054-16702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16054-16702 bp Feature: domain Description: GIIM Note: maturase Location: 16756-16987 bp Feature: domain Description: GIIM Note: maturase Location: 16756-16987 bp Feature: gene Location: 17370-19064 bp Feature: domain Description: Bac_Flav_CT_G Location: 17490-19056 bp Feature: domain Description: Bac_Flav_CT_G Location: 17490-19056 bp Feature: gene Location: 19079-19393 bp Feature: domain Description: DUF3876 Location: 19133-19382 bp Feature: domain Description: DUF3876 Location: 19133-19382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)