myRT

myRT report for GCA_003479435.1_ASM347943v1

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Seq: QUHD01000002.1 Eubacterium sp. AF15-50 AF15-50.Scaf2, whole genome shotgun sequence (468028 bp)
Overview 1 RT 1: 88058-91907 bp Neighborhood of RT #1 [88058, 91927] Alanine_zipper RVT-DGRs Phage_XkdX Feature: gene Location: 88058-88489 bp Feature: domain Description: Alanine_zipper Location: 88277-88388 bp Feature: domain Description: Alanine_zipper Location: 88277-88388 bp Feature: gene Location: 88493-89788 bp Feature: gene Location: 90153-91538 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90366-91110 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90366-91 1 1 0 bp Feature: gene Location: 91447-91773 bp Feature: gene Location: 91775-91927 bp Feature: domain Description: Phage_XkdX Location: 91796-91907 bp Feature: domain Description: Phage_XkdX Location: 91 796-91 907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alanine_zipper (pfam11839), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QUHD01000006.1 Eubacterium sp. AF15-50 AF15-50.Scaf6, whole genome shotgun sequence (177106 bp)
Overview 1 RT 1: 19652-24879 bp Neighborhood of RT #1 [19652, 24908] WYL RVT-GII GIIM SLATT_4 Feature: gene Location: 19652-20764 bp Feature: gene Location: 20853-22076 bp Feature: domain Description: WYL Location: 21438-22059 bp Feature: domain Description: WYL Location: 2 1438-2 2 059 bp Feature: gene Location: 22278-23561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22488-23103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 488-2 3103 bp Feature: domain Description: GIIM Note: maturase Location: 23163-23391 bp Feature: domain Description: GIIM Note: maturase Location: 2 3163-2 3391 bp Feature: gene Location: 23548-23691 bp Feature: gene Location: 24381-24908 bp Feature: domain Description: SLATT_4 Location: 24399-24879 bp Feature: domain Description: SLATT_4 Location: 2 4399-2 4879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), RVT-GII, GIIM (pfam08388), SLATT_4 (pfam18186)

Seq: QUHD01000009.1 Eubacterium sp. AF15-50 AF15-50.Scaf9, whole genome shotgun sequence (136378 bp)
Overview 1 RT 1: 33289-41241 bp Neighborhood of RT #1 [33289, 41264] TraC-F-type RVT-GII HNHc NlpD Spr Feature: gene Location: 33289-35541 bp Feature: domain Description: TraC-F-type Location: 33841-35530 bp Feature: domain Description: TraC-F-type Location: 3 3 841-3 553 0 bp Feature: gene Location: 35827-36075 bp Feature: gene Location: 36274-38157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36610-37327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6610-3 73 27 bp Feature: domain Description: HNHc Note: nucleases Location: 37909-38047 bp Feature: domain Description: HNHc Note: nucleases Location: 3 7909-3 8047 bp Feature: gene Location: 38337-38552 bp Feature: gene Location: 38586-41264 bp Feature: domain Description: NlpD Location: 40419-40779 bp Feature: domain Description: NlpD Location: 40419-40779 bp Feature: domain Description: Spr Location: 40899-41241 bp Feature: domain Description: Spr Location: 40899-41241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), NlpD (COG0739), Spr (COG0791)