myRT

myRT report for GCA_003479515.1_ASM347951v1

Download annotations/find similar RTs

Seq: QUHH01000013.1 Parabacteroides sp. AF14-59 AF14-59.Scaf13, whole genome shotgun sequence (189663 bp)
Overview 1 RT 1: 149372-156552 bp Neighborhood of RT #1 [149372, 157193] VirE_N PriCT_2 RVT-UG28b DUF262 SMC_N SMC_N Feature: gene Location: 149372-150541 bp Feature: gene Location: 151110-152120 bp Feature: domain Description: VirE_N Location: 151299-151674 bp Feature: domain Description: VirE_N Location: 1 51 299-1 51 674 bp Feature: domain Description: PriCT_2 Location: 151884-152091 bp Feature: domain Description: PriCT_2 Location: 1 51 884-1 52091 bp Feature: gene Location: 152276-154018 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 152693-153434 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 1 52693-1 53434 bp Feature: gene Location: 154142-155752 bp Feature: domain Description: DUF262 Location: 154178-154877 bp Feature: domain Description: DUF262 Location: 1 541 78-1 54877 bp Feature: gene Location: 155757-157193 bp Feature: domain Description: SMC_N Location: 155763-155889 bp Feature: domain Description: SMC_N Location: 1 55763-1 55889 bp Feature: domain Description: SMC_N Location: 156414-156552 bp Feature: domain Description: SMC_N Location: 1 5641 4-1 56552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirE_N (pfam08800), PriCT_2 (pfam08707), RVT-UG28b, DUF262 (pfam03235), SMC_N (pfam02463)

Seq: QUHH01000031.1 Parabacteroides sp. AF14-59 AF14-59.Scaf31, whole genome shotgun sequence (78452 bp)
Overview 1 RT 1: 67112-71748 bp Neighborhood of RT #1 [67112, 71783] RVT-DGRs Dam Feature: gene Location: 67112-68548 bp Feature: gene Location: 68796-68948 bp Feature: gene Location: 69046-70371 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 69256-69847 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 692 56-69847 bp Feature: gene Location: 70383-70796 bp Feature: gene Location: 70977-71783 bp Feature: domain Description: Dam Location: 70980-71748 bp Feature: domain Description: Dam Location: 70980-71748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: QUHH01000033.1 Parabacteroides sp. AF14-59 AF14-59.Scaf33, whole genome shotgun sequence (68543 bp)
Overview 1 RT 1: 47210-55542 bp Neighborhood of RT #1 [47210, 55547] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 47210-47524 bp Feature: domain Description: DUF3876 Location: 47264-47513 bp Feature: domain Description: DUF3 876 Location: 47264-47513 bp Feature: gene Location: 47539-49233 bp Feature: domain Description: Bac_Flav_CT_G Location: 47659-49225 bp Feature: domain Description: Bac_Flav_CT_G Location: 47659-49225 bp Feature: gene Location: 49230-50891 bp Feature: domain Description: RVT_N Location: 49284-49527 bp Feature: domain Description: RVT_N Location: 49284-49527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49572-50220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49572-50220 bp Feature: domain Description: GIIM Note: maturase Location: 50274-50505 bp Feature: domain Description: GIIM Note: maturase Location: 50274-50505 bp Feature: gene Location: 50973-51353 bp Feature: gene Location: 51475-52413 bp Feature: domain Description: Bac_Flav_CT_G Location: 51478-52399 bp Feature: domain Description: Bac_Flav_CT_G Location: 51478-523 99 bp Feature: gene Location: 52410-52883 bp Feature: domain Description: DUF4133 Location: 52614-52842 bp Feature: domain Description: DUF413 3 Location: 52614-52842 bp Feature: gene Location: 52793-54610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53057-53879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 057-53 879 bp Feature: domain Description: Intron_maturas2 Location: 53954-54281 bp Feature: domain Description: Intron_maturas2 Location: 53 954-54281 bp Feature: domain Description: HNHc Note: nucleases Location: 54434-54584 bp Feature: domain Description: HNHc Note: nucleases Location: 5443 4-54584 bp Feature: gene Location: 54624-54953 bp Feature: gene Location: 55245-55547 bp Feature: domain Description: DUF4134 Location: 55275-55542 bp Feature: domain Description: DUF413 4 Location: 55275-55542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: QUHH01000055.1 Parabacteroides sp. AF14-59 AF14-59.Scaf55, whole genome shotgun sequence (2497 bp)
Overview 1 RT 1: 118-1588 bp Neighborhood of RT #1 [118, 1920] matK RVT-GII Intron_maturas2 Feature: gene Location: 118-1920 bp Feature: domain Description: matK Location: 187-274 bp Feature: domain Description: matK Location: 187-274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Feature: domain Description: Intron_maturas2 Location: 1354 -1588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)