myRT

myRT report for GCA_003479565.1_ASM347956v1

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Seq: QUHQ01000001.1 Clostridium sp. AF12-19 AF12-19.Scaf1, whole genome shotgun sequence (307674 bp)
Overview 1 RT 1: 267491-273600 bp Neighborhood of RT #1 [267491, 273614] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII VirD4 DUF3801 Feature: gene Location: 267491-269350 bp Feature: domain Description: SR_TndX_transposase Location: 267512-267926 bp Feature: domain Description: SR_TndX_transposase Location: 26751 2-267926 bp Feature: domain Description: Recombinase Location: 268022-268385 bp Feature: domain Description: Recombinase Location: 268022-268385 bp Feature: domain Description: Zn_ribbon_recom Location: 268427-268610 bp Feature: domain Description: Zn_ribbon_recom Location: 268427-26861 0 bp Feature: domain Description: DUF4368 Location: 268889-269084 bp Feature: domain Description: DUF4368 Location: 268889-269084 bp Feature: gene Location: 269370-269636 bp Feature: gene Location: 269793-271703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270123-270867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701 23-270867 bp Feature: gene Location: 272329-273117 bp Feature: domain Description: VirD4 Location: 272563-273055 bp Feature: domain Description: VirD4 Location: 272563-273055 bp Feature: gene Location: 273132-273614 bp Feature: domain Description: DUF3801 Location: 273201-273600 bp Feature: domain Description: DUF3801 Location: 273201 -273600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, VirD4 (COG3505), DUF3801 (pfam12687)

Seq: QUHQ01000004.1 Clostridium sp. AF12-19 AF12-19.Scaf4, whole genome shotgun sequence (214233 bp)
Overview 1 RT 1: 81473-87213 bp Neighborhood of RT #1 [81473, 87227] PRK12893 PucR CdaR RVT-UG17 spore_V_AE Feature: gene Location: 81473-82690 bp Feature: domain Description: PRK12893 Location: 81512-82673 bp Feature: domain Description: PRK12 893 Location: 81512 -82 673 bp Feature: gene Location: 82959-84131 bp Feature: domain Description: PucR Location: 82977-83331 bp Feature: domain Description: PucR Location: 82 977-83331 bp Feature: domain Description: CdaR Location: 83337-84111 bp Feature: domain Description: CdaR Location: 83337-84111 bp Feature: gene Location: 84306-85616 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 84534-85119 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 84534-85119 bp Feature: gene Location: 86358-86501 bp Feature: gene Location: 86871-87227 bp Feature: domain Description: spore_V_AE Location: 86880-87213 bp Feature: domain Description: spore_V_AE Location: 86880-872 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12893 (Zn-dependent hydrolase), PucR (pfam07905), CdaR (COG3835), RVT-UG17, spore_V_AE (TIGR02839)

Seq: QUHQ01000007.1 Clostridium sp. AF12-19 AF12-19.Scaf7, whole genome shotgun sequence (142337 bp)
Overview 1 RT 1: 17268-19862 bp Neighborhood of RT #1 [17268, 19867] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 17268-17483 bp Feature: domain Description: Phage_holin_Dp1 Location: 17277-17463 bp Feature: domain Description: Phage_holin_Dp1 Location: 17277-17463 bp Feature: gene Location: 17470-17805 bp Feature: gene Location: 17831-19027 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18026-18743 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18026-18743 bp Feature: gene Location: 19233-19640 bp Feature: gene Location: 19724-19867 bp Feature: domain Description: Phage_XkdX Location: 19745-19862 bp Feature: domain Description: Phage_XkdX Location: 19745-19862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)