myRT

myRT report for GCA_003479665.1_ASM347966v1

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Seq: QUHK01000001.1 Blautia sp. AF14-40 AF14-40.Scaf1, whole genome shotgun sequence (431775 bp)
Overview 1 RT 1: 2709-9825 bp 2 RT 2: 413683-420144 bp Neighborhood of RT #1 [2709, 9845] VirB4_CagE VirB4_CagE RVT-GII Intron_maturas2 Spr Neighborhood of RT #2 [413683, 420149] Y1_Tnp InsQ RVT-GII GIIM PRK11588 PRK10657 Feature: gene Location: 2709-4895 bp Feature: domain Description: VirB4_CagE Location: 2847-3054 bp Feature: domain Description: VirB4_CagE Location: 2847-3054 bp Feature: domain Description: VirB4_CagE Location: 3525-4857 bp Feature: domain Description: VirB4_CagE Location: 3525-4857 bp Feature: gene Location: 4955-5107 bp Feature: gene Location: 5601-7391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5868-6681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5868-6681 bp Feature: domain Description: Intron_maturas2 Location: 6765-7062 bp Feature: domain Description: Intron_maturas2 Location: 6765-7062 bp Feature: gene Location: 7710-8624 bp Feature: gene Location: 8178-9845 bp Feature: domain Description: Spr Location: 9477-9825 bp Feature: domain Description: Spr Location: 9477-9825 bp Feature: gene Location: 413683-414120 bp Feature: domain Description: Y1_Tnp Location: 413716-414070 bp Feature: domain Description: Y1 _Tnp Location: 41 371 6-41 4070 bp Feature: gene Location: 414101-415204 bp Feature: domain Description: InsQ Location: 414110-415181 bp Feature: domain Description: InsQ Location: 41 41 1 0-41 51 81 bp Feature: gene Location: 415832-417109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416045-416660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6045-41 6660 bp Feature: domain Description: GIIM Note: maturase Location: 416726-416948 bp Feature: domain Description: GIIM Note: maturase Location: 41 6726-41 6948 bp Feature: gene Location: 417465-418985 bp Feature: domain Description: PRK11588 Location: 417504-418983 bp Feature: domain Description: PRK1 1 588 Location: 41 7504-41 8983 bp Feature: gene Location: 419001-420149 bp Feature: domain Description: PRK10657 Location: 419004-420144 bp Feature: domain Description: PRK1 0657 Location: 41 9004-4201 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), RVT-GII, Intron_maturas2 (pfam01348), Spr (COG0791), Y1_Tnp (pfam01797), InsQ (COG0675), GIIM (pfam08388), PRK11588 (putative basic amino acid antiporter YfcC), PRK10657 (isoaspartyl dipeptidase; Provisional)

Seq: QUHK01000011.1 Blautia sp. AF14-40 AF14-40.Scaf11, whole genome shotgun sequence (106554 bp)
Overview 1 RT 1: 72111-75851 bp Neighborhood of RT #1 [72111, 75853] AAA-ATPase_like PDDEXK_9 RVT-GII INT_RitC_C_like xerC Feature: gene Location: 72111-73553 bp Feature: domain Description: AAA-ATPase_like Location: 72117-72762 bp Feature: domain Description: AAA-ATPase_like Location: 72 117-72 762 bp Feature: domain Description: PDDEXK_9 Location: 73239-73539 bp Feature: domain Description: PDDEXK_9 Location: 732 39-73539 bp Feature: gene Location: 73775-74026 bp Feature: gene Location: 74029-74793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74344-74725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74344-7472 5 bp Feature: gene Location: 74840-75271 bp Feature: domain Description: INT_RitC_C_like Location: 74846-75185 bp Feature: domain Description: INT_RitC_C_like Location: 74846-75185 bp Feature: gene Location: 75362-75853 bp Feature: domain Description: xerC Location: 75380-75851 bp Feature: domain Description: xerC Location: 75380-75851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, INT_RitC_C_like (cd01182), xerC (PRK01287)

Seq: QUHK01000021.1 Blautia sp. AF14-40 AF14-40.Scaf21, whole genome shotgun sequence (64300 bp)
Overview 1 RT 1: 6277-11247 bp Neighborhood of RT #1 [6277, 11247] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 6277-8160 bp Feature: domain Description: SR_TndX_transposase Location: 6304-6718 bp Feature: domain Description: SR_TndX_transposase Location: 63 04-6718 bp Feature: domain Description: Recombinase Location: 6817-7186 bp Feature: domain Description: Recombinase Location: 6817-7186 bp Feature: domain Description: Zn_ribbon_recom Location: 7228-7411 bp Feature: domain Description: Zn_ribbon_recom Location: 7228-7411 bp Feature: domain Description: DUF4368 Location: 7687-7882 bp Feature: domain Description: DUF43 68 Location: 7687-7882 bp Feature: gene Location: 8473-8892 bp Feature: gene Location: 9036-10094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9039-9414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903 9-9414 bp Feature: domain Description: GIIM Note: maturase Location: 9465-9699 bp Feature: domain Description: GIIM Note: maturase Location: 9465-9699 bp Feature: gene Location: 9910-10701 bp Feature: RT Description: RVT_N Location: 9955-10198 bp Feature: RT Description: RVT_N Location: 9955-10198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10243-10558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10243 -10558 bp Feature: gene Location: 10649-10942 bp Feature: gene Location: 10966-11247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: QUHK01000040.1 Blautia sp. AF14-40 AF14-40.Scaf40, whole genome shotgun sequence (15691 bp)
Overview 1 RT 1: 13616-15675 bp Neighborhood of RT #1 [13616, 15689] FRG RVT-GII Feature: gene Location: 13616-14668 bp Feature: domain Description: FRG Location: 13718-13976 bp Feature: domain Description: FRG Location: 13718-13976 bp Feature: gene Location: 14898-15032 bp Feature: gene Location: 15237-15689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15492-15675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 92-15675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-GII

Seq: QUHK01000043.1 Blautia sp. AF14-40 AF14-40.Scaf43, whole genome shotgun sequence (14795 bp)
Overview 1 RT 1: 10150-14500 bp Neighborhood of RT #1 [10150, 14574] pfam13191 TPR IS285 RVT-GII Feature: gene Location: 10150-12507 bp Feature: domain Description: pfam13191 Location: 10657-10810 bp Feature: domain Description: pfam13191 Location: 1065 7-10810 bp Feature: domain Description: TPR Location: 11791-12475 bp Feature: domain Description: TPR Location: 11791-12475 bp Feature: gene Location: 12759-14000 bp Feature: domain Description: IS285 Location: 12831-13992 bp Feature: domain Description: IS285 Location: 12831-13992 bp Feature: gene Location: 14122-14574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14440-14500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14440-145 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam13191 (AAA_16;AAA ATPase domain), TPR (smart00028), IS285 (COG3328), RVT-GII

Seq: QUHK01000045.1 Blautia sp. AF14-40 AF14-40.Scaf45, whole genome shotgun sequence (12036 bp)
Overview 1 RT 1: 1-3799 bp Neighborhood of RT #1 [1, 3846] DNA_ligase_A_N RVT-GII Integrase_DNA Phage_int_SAM_5 INT_ICEBs1_C_like Feature: gene Location: 1-276 bp Feature: domain Description: DNA_ligase_A_N Location: 7-247 bp Feature: domain Description: DNA_ligase_A_N Location: 7-247 bp Feature: gene Location: 452-1747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1397 bp Feature: gene Location: 1837-2082 bp Feature: gene Location: 2653-3846 bp Feature: domain Description: Integrase_DNA Location: 2656-2866 bp Feature: domain Description: Integrase_DNA Location: 26 56 -286 6 bp Feature: domain Description: Phage_int_SAM_5 Location: 2953-3175 bp Feature: domain Description: Phage_int_SAM_5 Location: 2953-3175 bp Feature: domain Description: INT_ICEBs1_C_like Location: 3277-3799 bp Feature: domain Description: INT_ICEBs1_C_like Location: 3277-3799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_ligase_A_N (pfam04675), Integrase_DNA (pfam02920), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189), RVT-GII

Seq: QUHK01000005.1 Blautia sp. AF14-40 AF14-40.Scaf5, whole genome shotgun sequence (201405 bp)
Overview 1 RT 1: 200280-201364 bp Neighborhood of RT #1 [200280, 201402] MFS RVT-GII Feature: gene Location: 200280-200843 bp Feature: domain Description: MFS Location: 200295-200529 bp Feature: domain Description: MFS Location: 200295-200529 bp Feature: gene Location: 200929-201111 bp Feature: gene Location: 201145-201402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201172-201364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20117 2-201364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS (cl28910), RVT-GII