myRT

myRT report for GCA_003479725.1_ASM347972v1

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Seq: QUHP01000027.1 Clostridium sp. AF12-28 AF12-28.Scaf27, whole genome shotgun sequence (36585 bp)
Overview 1 RT 1: 32369-36583 bp Neighborhood of RT #1 [32369, 36583] DUF3801 VirD4 RVT-GII Feature: gene Location: 32369-32851 bp Feature: domain Description: DUF3801 Location: 32438-32837 bp Feature: domain Description: DUF3801 Location: 32438-32837 bp Feature: gene Location: 32866-33654 bp Feature: domain Description: VirD4 Location: 33100-33592 bp Feature: domain Description: VirD4 Location: 331 00-33592 bp Feature: gene Location: 34280-36190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34610-35354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461 0-35354 bp Feature: gene Location: 36214-36369 bp Feature: gene Location: 36422-36583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII

Seq: QUHP01000003.1 Clostridium sp. AF12-28 AF12-28.Scaf3, whole genome shotgun sequence (214007 bp)
Overview 1 RT 1: 81638-87378 bp Neighborhood of RT #1 [81638, 87392] PRK12893 PucR CdaR RVT-UG17 spore_V_AE Feature: gene Location: 81638-82855 bp Feature: domain Description: PRK12893 Location: 81677-82838 bp Feature: domain Description: PRK12 893 Location: 81677-82 838 bp Feature: gene Location: 83124-84296 bp Feature: domain Description: PucR Location: 83142-83496 bp Feature: domain Description: PucR Location: 83142 -83496 bp Feature: domain Description: CdaR Location: 83502-84276 bp Feature: domain Description: CdaR Location: 83502 -842 76 bp Feature: gene Location: 84471-85781 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 84699-85284 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 84699-852 84 bp Feature: gene Location: 86523-86666 bp Feature: gene Location: 87036-87392 bp Feature: domain Description: spore_V_AE Location: 87045-87378 bp Feature: domain Description: spore_V_AE Location: 87045-87378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12893 (Zn-dependent hydrolase), PucR (pfam07905), CdaR (COG3835), RVT-UG17, spore_V_AE (TIGR02839)

Seq: QUHP01000005.1 Clostridium sp. AF12-28 AF12-28.Scaf5, whole genome shotgun sequence (150475 bp)
Overview 1 RT 1: 6582-9176 bp Neighborhood of RT #1 [6582, 9181] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 6582-6797 bp Feature: domain Description: Phage_holin_Dp1 Location: 6591-6777 bp Feature: domain Description: Phage_holin_Dp1 Location: 6591-6777 bp Feature: gene Location: 6784-7119 bp Feature: gene Location: 7145-8341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7340-8057 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73 40-8057 bp Feature: gene Location: 8547-8954 bp Feature: gene Location: 9038-9181 bp Feature: domain Description: Phage_XkdX Location: 9059-9176 bp Feature: domain Description: Phage_XkdX Location: 9059-9176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)