myRT

myRT report for GCA_003479915.1_ASM347991v1

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Seq: QUIC01000102.1 Ruminococcus sp. AM46-18 AM46-18.Scaf102, whole genome shotgun sequence (8996 bp)
Overview 1 RT 1: 2-6030 bp Neighborhood of RT #1 [2, 6038] RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII TnpV Feature: gene Location: 2-166 bp Feature: gene Location: 271-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-484 bp Feature: domain Description: GIIM Note: maturase Location: 535-745 bp Feature: domain Description: GIIM Note: maturase Location: 535-745 bp Feature: gene Location: 1104-2339 bp Feature: domain Description: Phage_int_SAM_1 Location: 1458-1680 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 458-1 680 bp Feature: domain Description: INT_RitA_C_like Location: 1773-2313 bp Feature: domain Description: INT_RitA_C_like Location: 1 773-231 3 bp Feature: gene Location: 2332-3270 bp Feature: domain Description: INT_RitB_C_like Location: 2668-3253 bp Feature: domain Description: INT_RitB_C_like Location: 2668-3253 bp Feature: gene Location: 3294-4307 bp Feature: domain Description: Phage_int_SAM_1 Location: 3348-3594 bp Feature: domain Description: Phage_int_SAM_1 Location: 3348-3594 bp Feature: domain Description: INT_RitC_C_like Location: 3675-4221 bp Feature: domain Description: INT_RitC_C_like Location: 3675-4221 bp Feature: gene Location: 4351-5154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4702-5086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4702-5086 bp Feature: gene Location: 5160-5402 bp Feature: gene Location: 5673-6038 bp Feature: domain Description: TnpV Location: 5703-6030 bp Feature: domain Description: TnpV Location: 5703-6030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), TnpV (pfam14198)

Seq: QUIC01000106.1 Ruminococcus sp. AM46-18 AM46-18.Scaf106, whole genome shotgun sequence (8046 bp)
Overview 1 RT 1: 3-5170 bp Neighborhood of RT #1 [3, 5181] repA T4SS-DNA_transf RVT-GII RVT-GII TraG-D_C Maff2 Feature: gene Location: 3-530 bp Feature: domain Description: repA Location: 9-168 bp Feature: domain Description: repA Location: 9-168 bp Feature: gene Location: 709-1641 bp Feature: domain Description: T4SS-DNA_transf Location: 751-1585 bp Feature: domain Description: T4SS-DNA_transf Location: 751-1585 bp Feature: gene Location: 2399-3124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2708-3095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 708-3095 bp Feature: gene Location: 3160-4308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3247-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 47-3463 bp Feature: gene Location: 4318-4962 bp Feature: domain Description: TraG-D_C Location: 4411-4729 bp Feature: domain Description: TraG-D_C Location: 4411-472 9 bp Feature: gene Location: 5041-5181 bp Feature: domain Description: Maff2 Location: 5044-5170 bp Feature: domain Description: Maff2 Location: 5044-5170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT repA, T4SS-DNA_transf (pfam02534), RVT-GII, TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: QUIC01000011.1 Ruminococcus sp. AM46-18 AM46-18.Scaf11, whole genome shotgun sequence (80894 bp)
Overview 1 RT 1: 11790-16966 bp Neighborhood of RT #1 [11790, 16974] DppC DppB RVT-GII GIIM LysR Feature: gene Location: 11790-12656 bp Feature: domain Description: DppC Location: 11826-12648 bp Feature: domain Description: DppC Location: 11826-12648 bp Feature: gene Location: 12653-13597 bp Feature: domain Description: DppB Location: 12656-13583 bp Feature: domain Description: DppB Location: 12656-13 583 bp Feature: gene Location: 13885-15273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14218-14911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14218-14911 bp Feature: domain Description: GIIM Note: maturase Location: 14974-15184 bp Feature: domain Description: GIIM Note: maturase Location: 14974-15184 bp Feature: gene Location: 15879-16016 bp Feature: gene Location: 16066-16974 bp Feature: domain Description: LysR Location: 16069-16966 bp Feature: domain Description: LysR Location: 16069-16966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppC (COG1173), DppB (COG0601), RVT-GII, GIIM (pfam08388), LysR (COG0583)

Seq: QUIC01000143.1 Ruminococcus sp. AM46-18 AM46-18.Scaf143, whole genome shotgun sequence (2357 bp)
Overview 1 RT 1: 2-2273 bp Neighborhood of RT #1 [2, 2273] RVT_N RVT-GII YkfC Feature: gene Location: 2-214 bp Feature: gene Location: 604-1905 bp Feature: domain Description: RVT_N Location: 649-892 bp Feature: domain Description: RVT_N Location: 64 9-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937-1585 bp Feature: domain Description: YkfC Location: 1693-1882 bp Feature: domain Description: YkfC Location: 1693-1882 bp Feature: gene Location: 1908-2273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: QUIC01000149.1 Ruminococcus sp. AM46-18 AM46-18.Scaf149, whole genome shotgun sequence (1917 bp)
Overview 1 RT 1: 101-1914 bp Neighborhood of RT #1 [101, 1914] RVT-GII GIIM Feature: gene Location: 101-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-1043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 6-1043 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1328 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1328 bp Feature: gene Location: 1693-1914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUIC01000151.1 Ruminococcus sp. AM46-18 AM46-18.Scaf151, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 92-1685 bp Neighborhood of RT #1 [92, 1685] RVT-GII Feature: gene Location: 92-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1037 bp Feature: gene Location: 1440-1685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUIC01000018.1 Ruminococcus sp. AM46-18 AM46-18.Scaf18, whole genome shotgun sequence (62633 bp)
Overview 1 RT 1: 24628-28638 bp Neighborhood of RT #1 [24628, 28638] RVT-DGRs Feature: gene Location: 24628-24759 bp Feature: gene Location: 24767-25120 bp Feature: gene Location: 25080-26255 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25362-25995 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25362-25995 bp Feature: gene Location: 26643-28376 bp Feature: gene Location: 28390-28638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUIC01000004.1 Ruminococcus sp. AM46-18 AM46-18.Scaf4, whole genome shotgun sequence (176305 bp)
Overview 1 RT 1: 7866-12730 bp Neighborhood of RT #1 [7866, 12744] AAA_10 RVT-GII ArdA ArdA Feature: gene Location: 7866-8777 bp Feature: gene Location: 8777-9616 bp Feature: domain Description: AAA_10 Location: 8780-9578 bp Feature: domain Description: AAA_10 Location: 8 78 0-9578 bp Feature: gene Location: 9834-11651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10125-10824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10125-108 24 bp Feature: gene Location: 11773-12231 bp Feature: domain Description: ArdA Location: 11797-12211 bp Feature: domain Description: ArdA Location: 11797-12211 bp Feature: gene Location: 12247-12744 bp Feature: domain Description: ArdA Location: 12307-12730 bp Feature: domain Description: ArdA Location: 12307-12730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, ArdA (pfam07275)

Seq: QUIC01000081.1 Ruminococcus sp. AM46-18 AM46-18.Scaf81, whole genome shotgun sequence (15336 bp)
Overview 1 RT 1: 7621-10874 bp Neighborhood of RT #1 [7621, 10874] group_II_RT_mat RVT-GII HTH_XRE Feature: gene Location: 7621-7803 bp Feature: gene Location: 8016-8306 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8106-8265 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8106-8265 bp Feature: gene Location: 8333-9310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8336-8960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8336-89 60 bp Feature: gene Location: 9486-10292 bp Feature: domain Description: HTH_XRE Location: 9513-9684 bp Feature: domain Description: HTH_XRE Location: 9 513-9 684 bp Feature: gene Location: 10590-10874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, HTH_XRE (smart00530)