myRT

myRT report for GCA_003479935.1_ASM347993v1

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Seq: QUIE01000055.1 Clostridium sp. AM45-5 AM45-5.Scaf55, whole genome shotgun sequence (6562 bp)
Overview 1 RT 1: 3-3321 bp Neighborhood of RT #1 [3, 3437] YfcC RVT-GII GIIM HTH_XRE Feature: gene Location: 3-527 bp Feature: domain Description: YfcC Location: 12-501 bp Feature: domain Description: YfcC Location: 1 2-501 bp Feature: gene Location: 1002-1145 bp Feature: gene Location: 1132-2415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342-1957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342-1 957 bp Feature: domain Description: GIIM Note: maturase Location: 2017-2245 bp Feature: domain Description: GIIM Note: maturase Location: 201 7-2245 bp Feature: gene Location: 2716-3057 bp Feature: gene Location: 3126-3437 bp Feature: domain Description: HTH_XRE Location: 3153-3321 bp Feature: domain Description: HTH_XRE Location: 31 53-3321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), YfcC (COG1288)

Seq: QUIE01000057.1 Clostridium sp. AM45-5 AM45-5.Scaf57, whole genome shotgun sequence (6321 bp)
Overview 1 RT 1: 3-3229 bp Neighborhood of RT #1 [3, 3501] Peptidase_S51 RVT-GII AcrR FMN_red Feature: gene Location: 3-176 bp Feature: domain Description: Peptidase_S51 Location: 9-162 bp Feature: domain Description: Peptidase_S51 Location: 9-162 bp Feature: gene Location: 338-559 bp Feature: gene Location: 673-1968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 8-1618 bp Feature: gene Location: 2175-2804 bp Feature: domain Description: AcrR Location: 2184-2763 bp Feature: domain Description: AcrR Location: 2 184-2 763 bp Feature: gene Location: 2836-3501 bp Feature: domain Description: FMN_red Location: 2845-3229 bp Feature: domain Description: FMN_red Location: 2 845-32 2 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), FMN_red (pfam03358), Peptidase_S51 (pfam03575), RVT-GII