myRT

myRT report for GCA_003480035.1_ASM348003v1

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Seq: QUIG01000001.1 Ruminococcus sp. AM44-9AT AM44-9AT.Scaf1, whole genome shotgun sequence (194248 bp)
Overview 1 RT 1: 98602-100639 bp Neighborhood of RT #1 [98602, 100639] RVT-DGRs Feature: gene Location: 98602-98781 bp Feature: gene Location: 98886-99212 bp Feature: gene Location: 99200-100162 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99206-99776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99206-99776 bp Feature: gene Location: 100104-100448 bp Feature: gene Location: 100448-100639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUIG01000113.1 Ruminococcus sp. AM44-9AT AM44-9AT.Scaf113, whole genome shotgun sequence (1927 bp)
Overview 1 RT 1: 101-1924 bp Neighborhood of RT #1 [101, 1924] RVT-GII GIIM Feature: gene Location: 101-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-1043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-1043 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1328 bp Feature: domain Description: GIIM Note: maturase Location: 112 4-132 8 bp Feature: gene Location: 1694-1924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUIG01000002.1 Ruminococcus sp. AM44-9AT AM44-9AT.Scaf2, whole genome shotgun sequence (177975 bp)
Overview 1 RT 1: 33141-37799 bp Neighborhood of RT #1 [33141, 37804] ABC2_membrane_4 CcmA RVT-GII GIIM BaeS Feature: gene Location: 33141-33893 bp Feature: domain Description: ABC2_membrane_4 Location: 33144-33660 bp Feature: domain Description: ABC2_membrane_4 Location: 3 3 144-3 3 660 bp Feature: gene Location: 33919-34881 bp Feature: domain Description: CcmA Location: 33970-34864 bp Feature: domain Description: CcmA Location: 3 3 970-3 4864 bp Feature: gene Location: 35039-36328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35330-35963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 53 3 0-3 5963 bp Feature: domain Description: GIIM Note: maturase Location: 36044-36260 bp Feature: domain Description: GIIM Note: maturase Location: 3 6044-3 6260 bp Feature: gene Location: 36420-36629 bp Feature: gene Location: 36887-37804 bp Feature: domain Description: BaeS Location: 36902-37799 bp Feature: domain Description: BaeS Location: 3 6902-3 7799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane_4 (pfam12730), CcmA (COG4133), RVT-GII, GIIM (pfam08388), BaeS (COG0642)

Seq: QUIG01000040.1 Ruminococcus sp. AM44-9AT AM44-9AT.Scaf40, whole genome shotgun sequence (38893 bp)
Overview 1 RT 1: 15653-18488 bp Neighborhood of RT #1 [15653, 18502] LbH_XAT RVT-GII YafQ_toxin RelB_DinJ Feature: gene Location: 15653-15931 bp Feature: domain Description: LbH_XAT Location: 15656-15923 bp Feature: domain Description: LbH_XAT Location: 15656-15923 bp Feature: gene Location: 16292-16471 bp Feature: gene Location: 16561-17856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16816-17506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16816-17506 bp Feature: gene Location: 17952-18191 bp Feature: domain Description: YafQ_toxin Location: 17958-18186 bp Feature: domain Description: YafQ_toxin Location: 17958-18186 bp Feature: gene Location: 18230-18502 bp Feature: domain Description: RelB_DinJ Location: 18233-18488 bp Feature: domain Description: RelB_DinJ Location: 18233-184 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_XAT (cd03349), RVT-GII, YafQ_toxin (pfam15738), RelB_DinJ (TIGR02384)

Seq: QUIG01000042.1 Ruminococcus sp. AM44-9AT AM44-9AT.Scaf42, whole genome shotgun sequence (37866 bp)
Overview 1 RT 1: 1479-4716 bp Neighborhood of RT #1 [1479, 4721] Nitroreductase RVT-GII PRK11770 Feature: gene Location: 1479-1652 bp Feature: gene Location: 1656-2204 bp Feature: domain Description: Nitroreductase Location: 1683-2142 bp Feature: domain Description: Nitroreductase Location: 1683-2142 bp Feature: gene Location: 2372-3667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2627-3317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2627-3317 bp Feature: gene Location: 4160-4345 bp Feature: gene Location: 4545-4721 bp Feature: domain Description: PRK11770 Location: 4548-4716 bp Feature: domain Description: PRK11770 Location: 45 48-4716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nitroreductase (pfam00881), RVT-GII, PRK11770 (YccF domain-containing protein)

Seq: QUIG01000057.1 Ruminococcus sp. AM44-9AT AM44-9AT.Scaf57, whole genome shotgun sequence (22003 bp)
Overview 1 RT 1: 12104-21015 bp Neighborhood of RT #1 [12104, 21015] DNA2 DUF2726 HTH_26 Nudix_Hydrolase_34 RVT-UG3 RVT-UG8 COG2865 Feature: gene Location: 12104-14245 bp Feature: domain Description: DNA2 Location: 12113-13688 bp Feature: domain Description: DNA2 Location: 12113-136 88 bp Feature: domain Description: DUF2726 Location: 13868-14234 bp Feature: domain Description: DUF2726 Location: 1386 8-14234 bp Feature: gene Location: 14263-14985 bp Feature: domain Description: HTH_26 Location: 14299-14479 bp Feature: domain Description: HTH_26 Location: 14299-14479 bp Feature: domain Description: Nudix_Hydrolase_34 Location: 14572-14959 bp Feature: domain Description: Nudix_Hydrolase_34 Location: 14572-14959 bp Feature: gene Location: 15046-16356 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 15349-15808 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 15349-15808 bp Feature: gene Location: 16524-18596 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 17097-17541 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 17097-17541 bp Feature: gene Location: 18643-20028 bp Feature: domain Description: COG2865 Location: 18646-20023 bp Feature: domain Description: COG286 5 Location: 186 46 -20023 bp Feature: gene Location: 20233-21015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA2 (COG1112), DUF2726 (pfam10881), HTH_26 (pfam13443), Nudix_Hydrolase_34 (cd04693), RVT-UG3, RVT-UG8, COG2865 (Predicted transcriptional regulator, contains HTH domain )