myRT

myRT report for GCA_003480145.1_ASM348014v1

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Seq: QUIO01000015.1 Ruminococcus sp. AM42-11 AM42-11.Scaf15, whole genome shotgun sequence (105959 bp)
Overview 1 RT 1: 87376-93457 bp Neighborhood of RT #1 [87376, 93457] FepC FepD RVT-GII GIIM COG3547 Feature: gene Location: 87376-88476 bp Feature: domain Description: FepC Location: 87394-88102 bp Feature: domain Description: FepC Location: 87394-881 02 bp Feature: gene Location: 88478-89548 bp Feature: domain Description: FepD Location: 88559-89540 bp Feature: domain Description: FepD Location: 88559-89540 bp Feature: gene Location: 89876-91270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90230-90917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90230-9091 7 bp Feature: domain Description: GIIM Note: maturase Location: 90983-91202 bp Feature: domain Description: GIIM Note: maturase Location: 90983-91 202 bp Feature: gene Location: 91876-93180 bp Feature: domain Description: COG3547 Location: 91933-92968 bp Feature: domain Description: COG3547 Location: 91 933-92968 bp Feature: gene Location: 93281-93457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FepC (COG1120), FepD (COG0609), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: QUIO01000002.1 Ruminococcus sp. AM42-11 AM42-11.Scaf2, whole genome shotgun sequence (235451 bp)
Overview 1 RT 1: 41536-45546 bp Neighborhood of RT #1 [41536, 45566] TIGR00730 RVT-GII AAA_14 COG1373 Feature: gene Location: 41536-42072 bp Feature: domain Description: TIGR00730 Location: 41542-42052 bp Feature: domain Description: TIGR00730 Location: 41542 -42 052 bp Feature: gene Location: 42282-42527 bp Feature: gene Location: 42617-43912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42872-43562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 872 -43562 bp Feature: gene Location: 44299-44811 bp Feature: domain Description: AAA_14 Location: 44371-44767 bp Feature: domain Description: AAA_14 Location: 44371-44767 bp Feature: gene Location: 44808-45566 bp Feature: domain Description: COG1373 Location: 44814-45546 bp Feature: domain Description: COG1373 Location: 44814-45546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00730 (TIGR00730 family protein), RVT-GII, AAA_14 (pfam13173), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: QUIO01000021.1 Ruminococcus sp. AM42-11 AM42-11.Scaf21, whole genome shotgun sequence (79196 bp)
Overview 1 RT 1: 62356-70895 bp Neighborhood of RT #1 [62356, 70903] VOC Zn_ADH7 RVT-GII GIIM NagC HipB RVT-GII TnpV Feature: gene Location: 62356-62748 bp Feature: domain Description: VOC Location: 62392-62734 bp Feature: domain Description: VOC Location: 623 92-6273 4 bp Feature: gene Location: 62758-63807 bp Feature: domain Description: Zn_ADH7 Location: 62782-63793 bp Feature: domain Description: Zn_ADH7 Location: 62782-63 793 bp Feature: gene Location: 64023-65417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64341-64965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643 41-64965 bp Feature: domain Description: GIIM Note: maturase Location: 65022-65238 bp Feature: domain Description: GIIM Note: maturase Location: 65022-6523 8 bp Feature: gene Location: 65489-65647 bp Feature: gene Location: 66052-67053 bp Feature: domain Description: NagC Location: 66169-67027 bp Feature: domain Description: NagC Location: 66169-67027 bp Feature: gene Location: 67197-67502 bp Feature: gene Location: 67550-68716 bp Feature: domain Description: HipB Location: 67982-68234 bp Feature: domain Description: HipB Location: 67982-6823 4 bp Feature: gene Location: 68455-69861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68845-69508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68845-69508 bp Feature: gene Location: 70169-70303 bp Feature: gene Location: 70532-70903 bp Feature: domain Description: TnpV Location: 70568-70895 bp Feature: domain Description: TnpV Location: 70568-70895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC (cl14632), Zn_ADH7 (cd08261), RVT-GII, GIIM (pfam08388), NagC (COG1940), HipB (COG1396), TnpV (pfam14198)

Seq: QUIO01000035.1 Ruminococcus sp. AM42-11 AM42-11.Scaf35, whole genome shotgun sequence (42856 bp)
Overview 1 RT 1: 31015-36980 bp Neighborhood of RT #1 [31015, 36985] YktD RVT-GII GIIM ArsR ZntA ZntA HMA P-type_ATPase-Cd_Zn_Co_like Feature: gene Location: 31015-31821 bp Feature: domain Description: YktD Location: 31033-31675 bp Feature: domain Description: YktD Location: 31033-31675 bp Feature: gene Location: 32027-32287 bp Feature: gene Location: 32405-33703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32660-33353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32660-33353 bp Feature: domain Description: GIIM Note: maturase Location: 33413-33632 bp Feature: domain Description: GIIM Note: maturase Location: 334 13-33632 bp Feature: gene Location: 33981-34340 bp Feature: domain Description: ArsR Location: 34068-34326 bp Feature: domain Description: ArsR Location: 34 068-34 326 bp Feature: gene Location: 34400-36985 bp Feature: domain Description: ZntA Location: 34415-34607 bp Feature: domain Description: ZntA Location: 34 4 15-34 607 bp Feature: domain Description: ZntA Location: 34640-34835 bp Feature: domain Description: ZntA Location: 34 64 0-34 835 bp Feature: domain Description: HMA Location: 34886-35036 bp Feature: domain Description: HMA Location: 34 886-35036 bp Feature: domain Description: P-type_ATPase-Cd_Zn_Co_like Location: 35159-36980 bp Feature: domain Description: P-type_ATPase-Cd_Zn_Co_like Location: 35159-36980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YktD (COG3315), RVT-GII, GIIM (pfam08388), ArsR (pfam09824), ZntA (COG2217), HMA (pfam00403), P-type_ATPase-Cd_Zn_Co_like (cd07548)

Seq: QUIO01000090.1 Ruminococcus sp. AM42-11 AM42-11.Scaf90, whole genome shotgun sequence (2186 bp)
Overview 1 RT 1: 588-1859 bp Neighborhood of RT #1 [588, 2062] RVT_N RVT-GII GIIM Feature: gene Location: 588-1691 bp Feature: RT Description: RVT_N Location: 639-876 bp Feature: RT Description: RVT_N Location: 639-876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927-1575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927-15 75 bp Feature: gene Location: 1634-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1640-1859 bp Feature: domain Description: GIIM Note: maturase Location: 1640-185 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT_N (pfam13655), RVT-GII