myRT

myRT report for GCA_003480185.1_ASM348018v1

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Seq: QUIR01000001.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf1, whole genome shotgun sequence (294987 bp)
Overview 1 RT 1: 121801-126278 bp Neighborhood of RT #1 [121801, 126278] RVT-DGRs Feature: gene Location: 121801-121992 bp Feature: gene Location: 121992-122336 bp Feature: gene Location: 122278-123555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 122572-123166 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 22572-1 231 66 bp Feature: gene Location: 123678-123971 bp Feature: gene Location: 123996-126278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUIR01000002.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf2, whole genome shotgun sequence (256449 bp)
Overview 1 RT 1: 252263-256207 bp Neighborhood of RT #1 [252263, 256227] MecA_N FtsI RVT-GII GIIM Feature: gene Location: 252263-253420 bp Feature: gene Location: 253461-255563 bp Feature: domain Description: MecA_N Location: 253578-253920 bp Feature: domain Description: MecA_N Location: 2 53578-2 5392 0 bp Feature: domain Description: FtsI Location: 253929-255552 bp Feature: domain Description: FtsI Location: 2 5392 9-2 55552 bp Feature: gene Location: 255871-256227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255877-255961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 55877-2 55961 bp Feature: domain Description: GIIM Note: maturase Location: 256042-256207 bp Feature: domain Description: GIIM Note: maturase Location: 2 56042 -2 562 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MecA_N (pfam05223), FtsI (COG0768), RVT-GII, GIIM (pfam08388)

Seq: QUIR01000020.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf20, whole genome shotgun sequence (70880 bp)
Overview 1 RT 1: 9190-14226 bp Neighborhood of RT #1 [9190, 14612] COG3464 HTH_LUXR HTH_LUXR COG3464 RVT-GII Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 9190-10542 bp Feature: domain Description: COG3464 Location: 9235-9496 bp Feature: domain Description: COG3 464 Location: 923 5-9496 bp Feature: domain Description: HTH_LUXR Location: 9643-9709 bp Feature: domain Description: HTH_LUXR Location: 9643 -9709 bp Feature: domain Description: HTH_LUXR Location: 9814-9895 bp Feature: domain Description: HTH_LUXR Location: 9814-9895 bp Feature: domain Description: COG3464 Location: 10042-10510 bp Feature: domain Description: COG3 464 Location: 10042-10510 bp Feature: gene Location: 10673-11002 bp Feature: gene Location: 11011-11796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11266-11767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11266-11767 bp Feature: gene Location: 12384-12527 bp Feature: gene Location: 13107-14612 bp Feature: domain Description: Resolvase Location: 13128-13548 bp Feature: domain Description: Resolvase Location: 13 128-13 548 bp Feature: domain Description: Recombinase Location: 13641-14022 bp Feature: domain Description: Recombinase Location: 13 641-14022 bp Feature: domain Description: Zn_ribbon_recom Location: 14064-14226 bp Feature: domain Description: Zn_ribbon_recom Location: 14064-14226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), COG3464 (Transposase ), HTH_LUXR (smart00421)

Seq: QUIR01000022.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf22, whole genome shotgun sequence (67987 bp)
Overview 1 RT 1: 64245-67784 bp Neighborhood of RT #1 [64245, 67930] SalY ManC RVT-GII HxlR AAA_18 Feature: gene Location: 64245-64475 bp Feature: domain Description: SalY Location: 64272-64473 bp Feature: domain Description: SalY Location: 64 272-64 4 73 bp Feature: gene Location: 64576-65034 bp Feature: domain Description: ManC Location: 64804-64999 bp Feature: domain Description: ManC Location: 64 804 -64 999 bp Feature: gene Location: 65422-66828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65812-66475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65812-664 75 bp Feature: gene Location: 66937-67305 bp Feature: domain Description: HxlR Location: 66985-67300 bp Feature: domain Description: HxlR Location: 66985-67300 bp Feature: gene Location: 67385-67930 bp Feature: domain Description: AAA_18 Location: 67406-67784 bp Feature: domain Description: AAA_18 Location: 674 06-67784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SalY (COG0577), ManC (COG0662), RVT-GII, HxlR (pfam01638), AAA_18 (pfam13238)

Seq: QUIR01000042.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf42, whole genome shotgun sequence (37146 bp)
Overview 1 RT 1: 1541-4229 bp Neighborhood of RT #1 [1541, 4229] Nitroreductase Nitroreductase RVT-GII Feature: gene Location: 1541-1792 bp Feature: domain Description: Nitroreductase Location: 1553-1730 bp Feature: domain Description: Nitroreductase Location: 15 5 3-1730 bp Feature: gene Location: 1877-2089 bp Feature: domain Description: Nitroreductase Location: 1904-2060 bp Feature: domain Description: Nitroreductase Location: 1904-2060 bp Feature: gene Location: 2257-3552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2512-3202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 12-3202 bp Feature: gene Location: 3765-3947 bp Feature: gene Location: 4044-4229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nitroreductase (pfam00881), RVT-GII

Seq: QUIR01000075.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf75, whole genome shotgun sequence (2470 bp)
Overview 1 RT 1: 3-2246 bp Neighborhood of RT #1 [3, 2467] Holin_BhlA RVT-GII GIIM Feature: gene Location: 3-1064 bp Feature: gene Location: 1175-1489 bp Feature: domain Description: Holin_BhlA Location: 1262-1448 bp Feature: domain Description: Holin_BhlA Location: 126 2-1448 bp Feature: gene Location: 1688-2467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1691-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 91-1982 bp Feature: domain Description: GIIM Note: maturase Location: 2036-2246 bp Feature: domain Description: GIIM Note: maturase Location: 2036 -2246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Holin_BhlA (pfam10960), RVT-GII, GIIM (pfam08388)

Seq: QUIR01000077.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf77, whole genome shotgun sequence (1877 bp)
Overview 1 RT 1: 93-1874 bp Neighborhood of RT #1 [93, 1874] RVT-GII Feature: gene Location: 93-1388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-1038 bp Feature: gene Location: 1502-1651 bp Feature: gene Location: 1728-1874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUIR01000088.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf88, whole genome shotgun sequence (1032 bp)
Overview 1 RT 1: 3-576 bp Neighborhood of RT #1 [3, 575] RVT-GII Feature: gene Location: 3-575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII