myRT

myRT report for GCA_003480305.1_ASM348030v1

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Seq: QUIT01000011.1 Ruminococcus sp. AM34-9LB AM34-9LB.Scaf11, whole genome shotgun sequence (130313 bp)
Overview 1 RT 1: 58090-61113 bp Neighborhood of RT #1 [58090, 61113] RVT-UG27 Feature: gene Location: 58090-58374 bp Feature: gene Location: 58388-58786 bp Feature: gene Location: 58796-60091 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 58985-59645 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 58985-59645 bp Feature: gene Location: 60094-60456 bp Feature: gene Location: 60466-61113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QUIT01000028.1 Ruminococcus sp. AM34-9LB AM34-9LB.Scaf28, whole genome shotgun sequence (53329 bp)
Overview 1 RT 1: 17236-23457 bp Neighborhood of RT #1 [17236, 23492] RVT-GII RVT-GII GIIM group_II_RT_mat VanZ Feature: gene Location: 17236-18705 bp Feature: gene Location: 19253-19396 bp Feature: gene Location: 19405-20190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19660-20161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19660-2 0161 bp Feature: gene Location: 20297-20440 bp Feature: gene Location: 20492-20680 bp Feature: gene Location: 20711-21967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20915-21572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0915-2 1572 bp Feature: domain Description: GIIM Note: maturase Location: 21656-21869 bp Feature: domain Description: GIIM Note: maturase Location: 2 1656-2 1869 bp Feature: gene Location: 22093-22575 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 22102-22477 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 2 102 -2 2 477 bp Feature: gene Location: 22932-23492 bp Feature: domain Description: VanZ Location: 23079-23457 bp Feature: domain Description: VanZ Location: 2 3079-2 3457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), VanZ (pfam04892)

Seq: QUIT01000003.1 Ruminococcus sp. AM34-9LB AM34-9LB.Scaf3, whole genome shotgun sequence (199639 bp)
Overview 1 RT 1: 93288-97373 bp Neighborhood of RT #1 [93288, 97399] RVT-GII rSAM_mob_pairB Feature: gene Location: 93288-93443 bp Feature: gene Location: 93488-94405 bp Feature: gene Location: 94705-96000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94960-95650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94960-95650 bp Feature: gene Location: 96053-96298 bp Feature: gene Location: 96491-97399 bp Feature: domain Description: rSAM_mob_pairB Location: 96521-97373 bp Feature: domain Description: rSAM_mob_pairB Location: 96521-973 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rSAM_mob_pairB (TIGR04470)

Seq: QUIT01000050.1 Ruminococcus sp. AM34-9LB AM34-9LB.Scaf50, whole genome shotgun sequence (14666 bp)
Overview 1 RT 1: 2909-9254 bp Neighborhood of RT #1 [2909, 9298] HTH_XRE DBD_HTH RAYT RVT_N RVT-GII GIIM ADOP SalY YbbP SalY Feature: gene Location: 2909-3331 bp Feature: domain Description: HTH_XRE Location: 2951-3122 bp Feature: domain Description: HTH_XRE Location: 2951-3122 bp Feature: domain Description: DBD_HTH Location: 3158-3251 bp Feature: domain Description: DBD_HTH Location: 3158-3251 bp Feature: gene Location: 3758-4111 bp Feature: domain Description: RAYT Location: 3767-4034 bp Feature: domain Description: RAYT Location: 3767-4 034 bp Feature: gene Location: 4258-5790 bp Feature: domain Description: RVT_N Location: 4342-4585 bp Feature: domain Description: RVT_N Location: 4 34 2-4 585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4633-5287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 633-5287 bp Feature: domain Description: GIIM Note: maturase Location: 5341-5572 bp Feature: domain Description: GIIM Note: maturase Location: 534 1-5572 bp Feature: gene Location: 6015-6182 bp Feature: gene Location: 6920-9298 bp Feature: domain Description: ADOP Location: 6974-7100 bp Feature: domain Description: ADOP Location: 6974 -7100 bp Feature: domain Description: SalY Location: 7643-8045 bp Feature: domain Description: SalY Location: 764 3-804 5 bp Feature: domain Description: YbbP Location: 8078-8198 bp Feature: domain Description: YbbP Location: 8078-8198 bp Feature: domain Description: SalY Location: 8870-9254 bp Feature: domain Description: SalY Location: 8870-9254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DBD_HTH (pfam18430), RAYT (COG1943), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ADOP (TIGR03434), SalY (COG0577), YbbP (COG3127)