myRT

myRT report for GCA_003480505.1_ASM348050v1

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Seq: QUJH01000102.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf102, whole genome shotgun sequence (3157 bp)
Overview 1 RT 1: 166-3018 bp Neighborhood of RT #1 [166, 3018] group_II_RT_mat RVT-GII GIIM Feature: gene Location: 166-372 bp Feature: gene Location: 740-1222 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 749-1124 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 749-1 1 24 bp Feature: gene Location: 1348-2604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552-2209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 552-2209 bp Feature: domain Description: GIIM Note: maturase Location: 2293-2506 bp Feature: domain Description: GIIM Note: maturase Location: 2293-2506 bp Feature: gene Location: 2635-2823 bp Feature: gene Location: 2875-3018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: QUJH01000114.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf114, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 78-1892 bp Neighborhood of RT #1 [78, 1892] RVT-GII GIIM Feature: gene Location: 78-1382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 79-897 bp Feature: domain Description: GIIM Note: maturase Location: 951-1167 bp Feature: domain Description: GIIM Note: maturase Location: 951-1167 bp Feature: gene Location: 1737-1892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUJH01000012.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf12, whole genome shotgun sequence (78907 bp)
Overview 1 RT 1: 140-2722 bp Neighborhood of RT #1 [140, 2722] RVT-GII GIIM group_II_RT_mat Feature: gene Location: 140-283 bp Feature: gene Location: 335-523 bp Feature: gene Location: 554-1810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1415 bp Feature: domain Description: GIIM Note: maturase Location: 1499-1712 bp Feature: domain Description: GIIM Note: maturase Location: 1499-1712 bp Feature: gene Location: 1936-2418 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1939-2326 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 193 9-23 26 bp Feature: gene Location: 2537-2722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: QUJH01000124.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf124, whole genome shotgun sequence (1389 bp)
Overview 1 RT 1: 15-1138 bp Neighborhood of RT #1 [15, 1138] RVT-GII Feature: gene Location: 15-800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-771 bp Feature: gene Location: 926-1138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUJH01000036.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf36, whole genome shotgun sequence (45047 bp)
Overview 1 RT 1: 22407-25716 bp Neighborhood of RT #1 [22407, 25716] Hydrolase_4 Hydrolase_4 RVT-GII Feature: gene Location: 22407-23009 bp Feature: domain Description: Hydrolase_4 Location: 22587-22710 bp Feature: domain Description: Hydrolase_4 Location: 225 87-22710 bp Feature: domain Description: Hydrolase_4 Location: 22818-22956 bp Feature: domain Description: Hydrolase_4 Location: 22818-2295 6 bp Feature: gene Location: 23044-23511 bp Feature: gene Location: 23709-25004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23964-24654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23964-2465 4 bp Feature: gene Location: 25057-25302 bp Feature: gene Location: 25498-25716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hydrolase_4 (pfam12146), RVT-GII

Seq: QUJH01000007.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf7, whole genome shotgun sequence (97398 bp)
Overview 1 RT 1: 77839-85289 bp Neighborhood of RT #1 [77839, 85289] TrbL AAA_10 RVT-GII AAA_10 Feature: gene Location: 77839-80211 bp Feature: domain Description: TrbL Location: 78790-79147 bp Feature: domain Description: TrbL Location: 78790-79147 bp Feature: gene Location: 80208-81047 bp Feature: domain Description: AAA_10 Location: 80211-81009 bp Feature: domain Description: AAA_10 Location: 80211-81009 bp Feature: gene Location: 81265-83091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81565-82264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8156 5-8226 4 bp Feature: gene Location: 83788-84480 bp Feature: domain Description: AAA_10 Location: 84259-84445 bp Feature: domain Description: AAA_10 Location: 84259-84445 bp Feature: gene Location: 84477-85289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), AAA_10 (pfam12846), RVT-GII

Seq: QUJH01000070.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf70, whole genome shotgun sequence (18704 bp)
Overview 1 RT 1: 17060-18661 bp Neighborhood of RT #1 [17060, 18690] HxlR RVT-GII Feature: gene Location: 17060-17362 bp Feature: domain Description: HxlR Location: 17078-17357 bp Feature: domain Description: HxlR Location: 17 07 8-17 357 bp Feature: gene Location: 17681-17854 bp Feature: gene Location: 17905-18690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18160-18661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18160-18661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), RVT-GII

Seq: QUJH01000077.1 Ruminococcus sp. AM29-12LB AM29-12LB.Scaf77, whole genome shotgun sequence (14805 bp)
Overview 1 RT 1: 10739-14613 bp Neighborhood of RT #1 [10739, 14678] CHASE GGDEF PAS_3 RVT-GII GIIM Feature: gene Location: 10739-12508 bp Feature: domain Description: CHASE Location: 10751-11564 bp Feature: domain Description: CHASE Location: 10751-11564 bp Feature: domain Description: GGDEF Location: 11567-12071 bp Feature: domain Description: GGDEF Location: 11567-12071 bp Feature: domain Description: PAS_3 Location: 12191-12449 bp Feature: domain Description: PAS_3 Location: 12191-12449 bp Feature: gene Location: 13117-13254 bp Feature: gene Location: 13392-14678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13683-14316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1368 3-14316 bp Feature: domain Description: GIIM Note: maturase Location: 14397-14613 bp Feature: domain Description: GIIM Note: maturase Location: 14397-14613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHASE (smart01079), GGDEF (TIGR00254), PAS_3 (pfam08447), RVT-GII, GIIM (pfam08388)