myRT

myRT report for GCA_003480545.1_ASM348054v1

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Seq: QUJI01000016.1 Clostridium sp. AM29-11AC AM29-11AC.Scaf16, whole genome shotgun sequence (88080 bp)
Overview 1 RT 1: 85528-88075 bp Neighborhood of RT #1 [85528, 88077] PhnO RimL RVT-GII GIIM group_II_RT_mat Feature: gene Location: 85528-86412 bp Feature: domain Description: PhnO Location: 85627-85885 bp Feature: domain Description: PhnO Location: 85627-85885 bp Feature: domain Description: RimL Location: 86164-86383 bp Feature: domain Description: RimL Location: 861 64-86383 bp Feature: gene Location: 86469-86759 bp Feature: gene Location: 86854-87828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86860-87448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86860-87448 bp Feature: domain Description: GIIM Note: maturase Location: 87529-87748 bp Feature: domain Description: GIIM Note: maturase Location: 87529-87748 bp Feature: gene Location: 87874-88077 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 87892-88075 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 87892-88075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhnO (COG0454), RimL (COG1670), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: QUJI01000003.1 Clostridium sp. AM29-11AC AM29-11AC.Scaf3, whole genome shotgun sequence (231405 bp)
Overview 1 RT 1: 152542-158445 bp Neighborhood of RT #1 [152542, 158471] COG4637 COG4637 RVT-Retrons TSPO_MBR Feature: gene Location: 152542-153246 bp Feature: gene Location: 153493-155499 bp Feature: domain Description: COG4637 Location: 153496-153634 bp Feature: domain Description: COG4637 Location: 153496-153634 bp Feature: domain Description: COG4637 Location: 154270-154435 bp Feature: domain Description: COG4637 Location: 1542 70-154435 bp Feature: gene Location: 155756-156859 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155885-156461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155885-156461 bp Feature: gene Location: 156904-157827 bp Feature: gene Location: 157965-158471 bp Feature: domain Description: TSPO_MBR Location: 158016-158445 bp Feature: domain Description: TSPO_MBR Location: 158016-158445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), RVT-Retrons, TSPO_MBR (cl01379)

Seq: QUJI01000032.1 Clostridium sp. AM29-11AC AM29-11AC.Scaf32, whole genome shotgun sequence (30126 bp)
Overview 1 RT 1: 6834-10852 bp Neighborhood of RT #1 [6834, 10869] RVT-GII Intron_maturas2 HNHc IME4 Feature: gene Location: 6834-7502 bp Feature: gene Location: 7617-7835 bp Feature: gene Location: 8078-9910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8342-9173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 42-9173 bp Feature: domain Description: Intron_maturas2 Location: 9245-9560 bp Feature: domain Description: Intron_maturas2 Location: 9245-9560 bp Feature: domain Description: HNHc Note: nucleases Location: 9707-9881 bp Feature: domain Description: HNHc Note: nucleases Location: 9707-9881 bp Feature: gene Location: 9986-10288 bp Feature: gene Location: 10330-10869 bp Feature: domain Description: IME4 Location: 10357-10852 bp Feature: domain Description: IME4 Location: 103 57-10852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IME4 (COG4725), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUJI01000005.1 Clostridium sp. AM29-11AC AM29-11AC.Scaf5, whole genome shotgun sequence (210848 bp)
Overview 1 RT 1: 139070-141969 bp Neighborhood of RT #1 [139070, 141969] Cupin_2 RVT-Retrons Feature: gene Location: 139070-139660 bp Feature: gene Location: 139722-140048 bp Feature: domain Description: Cupin_2 Location: 139830-140031 bp Feature: domain Description: Cupin_2 Location: 139830-14 0031 bp Feature: gene Location: 140082-141095 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 140247-140802 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 024 7-14 0802 bp Feature: gene Location: 141173-141463 bp Feature: gene Location: 141571-141969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_2 (pfam07883), RVT-Retrons

Seq: QUJI01000052.1 Clostridium sp. AM29-11AC AM29-11AC.Scaf52, whole genome shotgun sequence (2573 bp)
Overview 1 RT 1: 3-2512 bp Neighborhood of RT #1 [3, 2512] RVT-GII GIIM Feature: gene Location: 3-266 bp Feature: gene Location: 280-606 bp Feature: gene Location: 712-2016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1633 bp Feature: domain Description: GIIM Note: maturase Location: 1705-1927 bp Feature: domain Description: GIIM Note: maturase Location: 1705 -1927 bp Feature: gene Location: 2357-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUJI01000060.1 Clostridium sp. AM29-11AC AM29-11AC.Scaf60, whole genome shotgun sequence (738 bp)
Overview 1 RT 1: 1-625 bp Neighborhood of RT #1 [1, 735] RVT-GII Feature: gene Location: 1-735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-6 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII