myRT

myRT report for GCA_003480555.1_ASM348055v1

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Seq: QUJD01000025.1 Blautia sp. AM29-29 AM29-29.Scaf25, whole genome shotgun sequence (32545 bp)
Overview 1 RT 1: 21052-28106 bp Neighborhood of RT #1 [21052, 28204] Spr RVT-GII Intron_maturas2 VirB4_CagE VirB4_CagE PrgI Feature: gene Location: 21052-22719 bp Feature: domain Description: Spr Location: 22351-22699 bp Feature: domain Description: Spr Location: 22351 -22699 bp Feature: gene Location: 22273-23187 bp Feature: gene Location: 23395-25185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23662-24475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23662-24475 bp Feature: domain Description: Intron_maturas2 Location: 24559-24856 bp Feature: domain Description: Intron_maturas2 Location: 24559-24856 bp Feature: gene Location: 25714-27900 bp Feature: domain Description: VirB4_CagE Location: 25852-26059 bp Feature: domain Description: VirB4_CagE Location: 25852-26059 bp Feature: domain Description: VirB4_CagE Location: 26530-27862 bp Feature: domain Description: VirB4_CagE Location: 26530-27862 bp Feature: gene Location: 27818-28204 bp Feature: domain Description: PrgI Location: 27833-28106 bp Feature: domain Description: PrgI Location: 27833-281 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), PrgI (pfam12666)

Seq: QUJD01000033.1 Blautia sp. AM29-29 AM29-29.Scaf33, whole genome shotgun sequence (14085 bp)
Overview 1 RT 1: 6030-12940 bp Neighborhood of RT #1 [6030, 13047] RMtype1_S_TRD-CR_like RMtype1_S_TRD-CR_like COG0610 RVT-UG2 DUF4869 AAA_22 AAA_22 Feature: gene Location: 6030-7136 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 6243-6489 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 62 43-6489 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 6663-7077 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 6663-7077 bp Feature: gene Location: 7141-10584 bp Feature: domain Description: COG0610 Location: 7180-10153 bp Feature: domain Description: COG0610 Location: 7180-10153 bp Feature: gene Location: 10900-12198 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 11083-11899 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 11083-11899 bp Feature: gene Location: 12204-12656 bp Feature: domain Description: DUF4869 Location: 12252-12513 bp Feature: domain Description: DUF4869 Location: 12 2 52 -12 513 bp Feature: gene Location: 12646-13047 bp Feature: domain Description: AAA_22 Location: 12706-12781 bp Feature: domain Description: AAA_2 2 Location: 12 706-12 781 bp Feature: domain Description: AAA_22 Location: 12838-12940 bp Feature: domain Description: AAA_2 2 Location: 12 838-12 940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_TRD-CR_like (cl38903), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG2, DUF4869 (pfam16163), AAA_22 (pfam13401)

Seq: QUJD01000036.1 Blautia sp. AM29-29 AM29-29.Scaf36, whole genome shotgun sequence (10951 bp)
Overview 1 RT 1: 2294-10253 bp Neighborhood of RT #1 [2294, 10882] RVT-GII sortase_fam SpaA CollagenBindB SpaA Feature: gene Location: 2294-2806 bp Feature: gene Location: 2883-3137 bp Feature: gene Location: 3122-4018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332-3509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 2-3 509 bp Feature: domain Description: sortase_fam Location: 3509-3860 bp Feature: domain Description: sortase_fam Location: 3 509-3 860 bp Feature: gene Location: 4427-4837 bp Feature: gene Location: 4880-10882 bp Feature: domain Description: SpaA Location: 9203-9407 bp Feature: domain Description: SpaA Location: 9203 -9407 bp Feature: domain Description: CollagenBindB Location: 9581-9809 bp Feature: domain Description: CollagenBindB Location: 9581-9809 bp Feature: domain Description: SpaA Location: 9998-10253 bp Feature: domain Description: SpaA Location: 9998-10253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, sortase_fam (TIGR01076), SpaA (pfam17802), CollagenBindB (cl15753)

Seq: QUJD01000046.1 Blautia sp. AM29-29 AM29-29.Scaf46, whole genome shotgun sequence (2384 bp)
Overview 1 RT 1: 117-2327 bp Neighborhood of RT #1 [117, 2327] RVT_N RVT-GII GIIM Feature: gene Location: 117-1781 bp Feature: domain Description: RVT_N Location: 162-405 bp Feature: domain Description: RVT_N Location: 162-4 05 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 50-1101 bp Feature: domain Description: GIIM Note: maturase Location: 1152-1386 bp Feature: domain Description: GIIM Note: maturase Location: 1152-1386 bp Feature: gene Location: 1729-2022 bp Feature: gene Location: 2046-2327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QUJD01000006.1 Blautia sp. AM29-29 AM29-29.Scaf6, whole genome shotgun sequence (194498 bp)
Overview 1 RT 1: 190221-193754 bp Neighborhood of RT #1 [190221, 193936] PRK15098 BglX DegV RVT-GII GIIM Feature: gene Location: 190221-191759 bp Feature: domain Description: PRK15098 Location: 190272-190452 bp Feature: domain Description: PRK15 098 Location: 190272-19045 2 bp Feature: domain Description: BglX Location: 190926-191445 bp Feature: domain Description: BglX Location: 190926-191445 bp Feature: gene Location: 192162-192524 bp Feature: domain Description: DegV Location: 192189-192492 bp Feature: domain Description: DegV Location: 192189-192492 bp Feature: gene Location: 192617-193936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192863-193478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192863-193478 bp Feature: domain Description: GIIM Note: maturase Location: 193538-193754 bp Feature: domain Description: GIIM Note: maturase Location: 1935 38-19375 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15098 (beta-glucosidase BglX), BglX (COG1472), DegV (TIGR00762), RVT-GII, GIIM (pfam08388)