myRT

myRT report for GCA_003480725.1_ASM348072v1

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Seq: QUJQ01000001.1 Clostridiaceae bacterium AM27-36LB AM27-36LB.Scaf1, whole genome shotgun sequence (605749 bp)
Overview 1 RT 1: 443725-446390 bp Neighborhood of RT #1 [443725, 446407] Phage_XkdX RVT-DGRs Phage_holin_5_2 Feature: gene Location: 443725-443868 bp Feature: domain Description: Phage_XkdX Location: 443746-443863 bp Feature: domain Description: Phage_XkdX Location: 443746-443863 bp Feature: gene Location: 443865-444350 bp Feature: gene Location: 444562-445758 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 444757-445480 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 444757-445480 bp Feature: gene Location: 445761-446099 bp Feature: gene Location: 446111-446407 bp Feature: domain Description: Phage_holin_5_2 Location: 446159-446390 bp Feature: domain Description: Phage_holin_5_2 Location: 4461 59-446390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079)

Seq: QUJQ01000017.1 Clostridiaceae bacterium AM27-36LB AM27-36LB.Scaf17, whole genome shotgun sequence (1916 bp)
Overview 1 RT 1: 81-1741 bp Neighborhood of RT #1 [81, 1741] RVT-GII GIIM Feature: gene Location: 81-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432 -1053 bp Feature: domain Description: GIIM Note: maturase Location: 1104-1314 bp Feature: domain Description: GIIM Note: maturase Location: 1104-1314 bp Feature: gene Location: 1499-1741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QUJQ01000002.1 Clostridiaceae bacterium AM27-36LB AM27-36LB.Scaf2, whole genome shotgun sequence (556361 bp)
Overview 1 RT 1: 291314-296574 bp Neighborhood of RT #1 [291314, 296576] RVT-GII GIIM leuS Feature: gene Location: 291314-291685 bp Feature: gene Location: 291958-292209 bp Feature: gene Location: 292307-293596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292598-293231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292598-293 23 1 bp Feature: domain Description: GIIM Note: maturase Location: 293315-293537 bp Feature: domain Description: GIIM Note: maturase Location: 293 3 15-293 53 7 bp Feature: gene Location: 293714-293869 bp Feature: gene Location: 294174-296576 bp Feature: domain Description: leuS Location: 294180-296574 bp Feature: domain Description: leuS Location: 294180-296574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), leuS (PRK12300)

Seq: QUJQ01000005.1 Clostridiaceae bacterium AM27-36LB AM27-36LB.Scaf5, whole genome shotgun sequence (334812 bp)
Overview 1 RT 1: 266909-272040 bp Neighborhood of RT #1 [266909, 272054] Maff2 VirD4 RVT_N RVT-GII GIIM VirD4 DUF3801 Feature: gene Location: 266909-267127 bp Feature: domain Description: Maff2 Location: 266912-267119 bp Feature: domain Description: Maff2 Location: 266912-267119 bp Feature: gene Location: 267348-268454 bp Feature: domain Description: VirD4 Location: 267360-268353 bp Feature: domain Description: VirD4 Location: 267360-268353 bp Feature: gene Location: 268589-270253 bp Feature: domain Description: RVT_N Location: 268634-268877 bp Feature: domain Description: RVT_N Location: 268634 -268877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268922-269573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268922-269573 bp Feature: domain Description: GIIM Note: maturase Location: 269624-269858 bp Feature: domain Description: GIIM Note: maturase Location: 269624 -269858 bp Feature: gene Location: 270835-271557 bp Feature: domain Description: VirD4 Location: 271057-271402 bp Feature: domain Description: VirD4 Location: 271057-2714 02 bp Feature: gene Location: 271554-272054 bp Feature: domain Description: DUF3801 Location: 271626-272040 bp Feature: domain Description: DUF3801 Location: 271626-27204 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3801 (pfam12687)

Seq: QUJQ01000008.1 Clostridiaceae bacterium AM27-36LB AM27-36LB.Scaf8, whole genome shotgun sequence (100178 bp)
Overview 1 RT 1: 40925-45428 bp Neighborhood of RT #1 [40925, 45448] ZnuB RVT-GII GIIM NosY CcmA Feature: gene Location: 40925-41776 bp Feature: domain Description: ZnuB Location: 40949-41765 bp Feature: domain Description: ZnuB Location: 40949-41765 bp Feature: gene Location: 41773-42402 bp Feature: gene Location: 42506-43168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42542-42710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425 42-42710 bp Feature: domain Description: GIIM Note: maturase Location: 42770-42989 bp Feature: domain Description: GIIM Note: maturase Location: 42770-42989 bp Feature: gene Location: 43825-44532 bp Feature: domain Description: NosY Location: 43867-44407 bp Feature: domain Description: NosY Location: 43867-44407 bp Feature: gene Location: 44525-45448 bp Feature: domain Description: CcmA Location: 44537-45428 bp Feature: domain Description: CcmA Location: 445 37-45 428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZnuB (COG1108), RVT-GII, GIIM (pfam08388), NosY (COG1277), CcmA (COG4133)