myRT

myRT report for GCA_003480765.1_ASM348076v1

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Seq: QUJV01000001.1 Ruminococcus sp. AM27-16 AM27-16.Scaf1, whole genome shotgun sequence (423758 bp)
Overview 1 RT 1: 48267-50557 bp Neighborhood of RT #1 [48267, 50557] RVT-DGRs Feature: gene Location: 48267-48413 bp Feature: gene Location: 48427-48699 bp Feature: gene Location: 48752-49954 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48986-49574 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48986-49574 bp Feature: gene Location: 49854-50240 bp Feature: gene Location: 50375-50557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUJV01000011.1 Ruminococcus sp. AM27-16 AM27-16.Scaf11, whole genome shotgun sequence (125264 bp)
Overview 1 RT 1: 19703-24606 bp Neighborhood of RT #1 [19703, 24611] PRK03103 RVT_N RVT-GII GIIM HipB COG2932 XRE Feature: gene Location: 19703-19945 bp Feature: gene Location: 19966-21294 bp Feature: domain Description: PRK03103 Location: 20092-21229 bp Feature: domain Description: PRK03103 Location: 2 0092 -2 12 2 9 bp Feature: gene Location: 21291-22760 bp Feature: RT Description: RVT_N Location: 21336-21573 bp Feature: RT Description: RVT_N Location: 2 1336-2 1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21624-22272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 162 4-2 2 2 72 bp Feature: domain Description: GIIM Note: maturase Location: 22323-22557 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 32 3-2 2 557 bp Feature: gene Location: 23623-24354 bp Feature: domain Description: HipB Location: 23635-23851 bp Feature: domain Description: HipB Location: 2 3635-2 3851 bp Feature: domain Description: COG2932 Location: 24007-24319 bp Feature: domain Description: COG2 932 Location: 2 4007-2 4319 bp Feature: gene Location: 24411-24611 bp Feature: domain Description: XRE Location: 24423-24606 bp Feature: domain Description: XRE Location: 2 442 3-2 4606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476)

Seq: QUJV01000002.1 Ruminococcus sp. AM27-16 AM27-16.Scaf2, whole genome shotgun sequence (322945 bp)
Overview 1 RT 1: 150591-155693 bp Neighborhood of RT #1 [150591, 155707] RAYT RVT-GII GIIM MacB_PCD SalY SalY LolD Feature: gene Location: 150591-150794 bp Feature: gene Location: 150896-151243 bp Feature: domain Description: RAYT Location: 150902-151166 bp Feature: domain Description: RAYT Location: 150902-151166 bp Feature: gene Location: 151396-152511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151399-152008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513 99-152008 bp Feature: domain Description: GIIM Note: maturase Location: 152062-152293 bp Feature: domain Description: GIIM Note: maturase Location: 152062-152293 bp Feature: gene Location: 152508-154961 bp Feature: domain Description: MacB_PCD Location: 152565-153162 bp Feature: domain Description: MacB_PCD Location: 152565-153 162 bp Feature: domain Description: SalY Location: 153297-153711 bp Feature: domain Description: SalY Location: 153 297-153 711 bp Feature: domain Description: SalY Location: 154287-154941 bp Feature: domain Description: SalY Location: 154287-154941 bp Feature: gene Location: 154958-155707 bp Feature: domain Description: LolD Location: 155048-155693 bp Feature: domain Description: LolD Location: 155048-155693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, GIIM (pfam08388), MacB_PCD (pfam12704), SalY (COG0577), LolD (COG1136)

Seq: QUJV01000030.1 Ruminococcus sp. AM27-16 AM27-16.Scaf30, whole genome shotgun sequence (40179 bp)
Overview 1 RT 1: 27820-31554 bp Neighborhood of RT #1 [27820, 31554] VanZ RVT-GII GIIM Feature: gene Location: 27820-28380 bp Feature: domain Description: VanZ Location: 27973-28345 bp Feature: domain Description: VanZ Location: 27973-2834 5 bp Feature: gene Location: 28547-28831 bp Feature: gene Location: 29126-30424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29381-30068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29381-30068 bp Feature: domain Description: GIIM Note: maturase Location: 30149-30353 bp Feature: domain Description: GIIM Note: maturase Location: 3014 9-30353 bp Feature: gene Location: 30637-30840 bp Feature: gene Location: 31030-31554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VanZ (pfam04892), RVT-GII, GIIM (pfam08388)

Seq: QUJV01000038.1 Ruminococcus sp. AM27-16 AM27-16.Scaf38, whole genome shotgun sequence (20237 bp)
Overview 1 RT 1: 15135-19426 bp Neighborhood of RT #1 [15135, 19440] RVT-GII COG1373 HTH_17 Feature: gene Location: 15135-15353 bp Feature: gene Location: 15578-15757 bp Feature: gene Location: 15847-17142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16102-16792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16102-16792 bp Feature: gene Location: 17535-18788 bp Feature: domain Description: COG1373 Location: 17538-18768 bp Feature: domain Description: COG1373 Location: 175 38-18768 bp Feature: gene Location: 19264-19440 bp Feature: domain Description: HTH_17 Location: 19285-19426 bp Feature: domain Description: HTH_17 Location: 19285 -19426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG1373 (Predicted ATPase, AAA+ superfamily ), HTH_17 (pfam12728)

Seq: QUJV01000009.1 Ruminococcus sp. AM27-16 AM27-16.Scaf9, whole genome shotgun sequence (145932 bp)
Overview 1 RT 1: 73344-78508 bp Neighborhood of RT #1 [73344, 78508] RVT-DGRs Feature: gene Location: 73344-74066 bp Feature: gene Location: 74066-76348 bp Feature: gene Location: 76754-78031 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77048-77639 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77048-776 39 bp Feature: gene Location: 77973-78317 bp Feature: gene Location: 78317-78508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs