myRT

myRT report for GCA_003480885.1_ASM348088v1

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Seq: QUKB01000001.1 Ruminococcus sp. TM09-4 TM09-4.Scaf1, whole genome shotgun sequence (287531 bp)
Overview 1 RT 1: 173695-176389 bp Neighborhood of RT #1 [173695, 176389] RVT-UG27 Feature: gene Location: 173695-174009 bp Feature: gene Location: 174023-174385 bp Feature: gene Location: 174388-175683 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 174577-175237 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 74577-1 75237 bp Feature: gene Location: 175693-176091 bp Feature: gene Location: 176105-176389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QUKB01000002.1 Ruminococcus sp. TM09-4 TM09-4.Scaf2, whole genome shotgun sequence (245805 bp)
Overview 1 RT 1: 66661-73721 bp 2 RT 2: 241851-245160 bp Neighborhood of RT #1 [66661, 73858] VanZ group_II_RT_mat RVT-GII GIIM RVT-GII NA37 Neighborhood of RT #2 [241851, 245160] MhpC RVT-GII Feature: gene Location: 66661-67221 bp Feature: domain Description: VanZ Location: 66808-67186 bp Feature: domain Description: VanZ Location: 66808-67186 bp Feature: gene Location: 67578-68060 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 67587-67962 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 67587-67962 bp Feature: gene Location: 68186-69442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68390-69047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68390-69047 bp Feature: domain Description: GIIM Note: maturase Location: 69131-69344 bp Feature: domain Description: GIIM Note: maturase Location: 69131-69344 bp Feature: gene Location: 69473-69661 bp Feature: gene Location: 69713-69856 bp Feature: gene Location: 69963-70748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70218-70719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702 18-70719 bp Feature: gene Location: 71324-72793 bp Feature: gene Location: 72800-73858 bp Feature: domain Description: NA37 Location: 73112-73721 bp Feature: domain Description: NA37 Location: 73112 -7372 1 bp Feature: gene Location: 241851-242453 bp Feature: domain Description: MhpC Location: 241968-242409 bp Feature: domain Description: MhpC Location: 2 41968-2 42 409 bp Feature: gene Location: 242488-242955 bp Feature: gene Location: 243153-244448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243408-244098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 43408-2 44098 bp Feature: gene Location: 244501-244746 bp Feature: gene Location: 244942-245160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VanZ (pfam04892), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), NA37 (pfam04245), MhpC (COG0596)

Seq: QUKB01000021.1 Ruminococcus sp. TM09-4 TM09-4.Scaf21, whole genome shotgun sequence (72808 bp)
Overview 1 RT 1: 66822-70911 bp Neighborhood of RT #1 [66822, 70911] YgiQ RVT-GII Intron_maturas2 HNHc Feature: gene Location: 66822-67442 bp Feature: domain Description: YgiQ Location: 66930-67209 bp Feature: domain Description: YgiQ Location: 6693 0-67209 bp Feature: gene Location: 67408-67737 bp Feature: gene Location: 67837-69669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68101-68932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68101-6893 2 bp Feature: domain Description: Intron_maturas2 Location: 69001-69319 bp Feature: domain Description: Intron_maturas2 Location: 69001-693 19 bp Feature: domain Description: HNHc Note: nucleases Location: 69469-69640 bp Feature: domain Description: HNHc Note: nucleases Location: 69469-69640 bp Feature: gene Location: 69671-70129 bp Feature: gene Location: 70246-70911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgiQ (COG1032), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUKB01000047.1 Ruminococcus sp. TM09-4 TM09-4.Scaf47, whole genome shotgun sequence (21305 bp)
Overview 1 RT 1: 12580-19016 bp Neighborhood of RT #1 [12580, 19048] RVT-GII GIIM UgpB 5_nucleotid_C dCache_1 TMAO_torS Feature: gene Location: 12580-12759 bp Feature: gene Location: 13057-13194 bp Feature: gene Location: 13332-14618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13623-14256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13623-14 256 bp Feature: domain Description: GIIM Note: maturase Location: 14337-14553 bp Feature: domain Description: GIIM Note: maturase Location: 14 337-14 553 bp Feature: gene Location: 14877-16757 bp Feature: domain Description: UgpB Location: 14931-16155 bp Feature: domain Description: UgpB Location: 14 931-16155 bp Feature: domain Description: 5_nucleotid_C Location: 16251-16611 bp Feature: domain Description: 5_nucleotid_C Location: 16251-16611 bp Feature: gene Location: 16760-19048 bp Feature: domain Description: dCache_1 Location: 16901-17585 bp Feature: domain Description: dCache_1 Location: 16901-17585 bp Feature: domain Description: TMAO_torS Location: 17750-19016 bp Feature: domain Description: TMAO_torS Location: 17750-19016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), UgpB (COG1653), 5_nucleotid_C (pfam02872), dCache_1 (pfam02743), TMAO_torS (TIGR02956)