myRT

myRT report for GCA_003481105.1_ASM348110v1

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Seq: QUKL01000001.1 Lachnospiraceae bacterium TF10-8AT TF10-8AT.Scaf1, whole genome shotgun sequence (203637 bp)
Overview 1 RT 1: 37962-45909 bp Neighborhood of RT #1 [37962, 45938] SH3b PRK13914 Spr RVT-GII GIIM AzgA carB Feature: gene Location: 37962-38897 bp Feature: domain Description: SH3b Location: 38088-38262 bp Feature: domain Description: SH3b Location: 38088-38262 bp Feature: domain Description: PRK13914 Location: 38313-38505 bp Feature: domain Description: PRK1 391 4 Location: 3831 3-38505 bp Feature: domain Description: Spr Location: 38535-38832 bp Feature: domain Description: Spr Location: 38535-38832 bp Feature: gene Location: 39207-39404 bp Feature: gene Location: 39407-40798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39722-40346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39722-40346 bp Feature: domain Description: GIIM Note: maturase Location: 40403-40613 bp Feature: domain Description: GIIM Note: maturase Location: 40403-4061 3 bp Feature: gene Location: 40873-42237 bp Feature: domain Description: AzgA Location: 40876-42232 bp Feature: domain Description: AzgA Location: 40876-42232 bp Feature: gene Location: 42705-45938 bp Feature: domain Description: carB Location: 42708-45909 bp Feature: domain Description: carB Location: 42708-45909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3b (smart00287), PRK13914 (invasion associated endopeptidase), Spr (COG0791), RVT-GII, GIIM (pfam08388), AzgA (COG2252), carB (PRK12815)

Seq: QUKL01000010.1 Lachnospiraceae bacterium TF10-8AT TF10-8AT.Scaf10, whole genome shotgun sequence (100816 bp)
Overview 1 RT 1: 3025-8600 bp Neighborhood of RT #1 [3025, 8641] Peptidase_C39_2 RVT-GII GIIM pyru_phos_dikin Feature: gene Location: 3025-3774 bp Feature: domain Description: Peptidase_C39_2 Location: 3178-3532 bp Feature: domain Description: Peptidase_C39_2 Location: 3178-3532 bp Feature: gene Location: 4008-4145 bp Feature: gene Location: 4233-5645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4584-5205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4584-52 05 bp Feature: domain Description: GIIM Note: maturase Location: 5259-5484 bp Feature: domain Description: GIIM Note: maturase Location: 52 59-5484 bp Feature: gene Location: 5748-5993 bp Feature: gene Location: 6017-8641 bp Feature: domain Description: pyru_phos_dikin Location: 6029-8600 bp Feature: domain Description: pyru_phos_dikin Location: 602 9-8600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C39_2 (pfam13529), RVT-GII, GIIM (pfam08388), pyru_phos_dikin (TIGR01828)

Seq: QUKL01000024.1 Lachnospiraceae bacterium TF10-8AT TF10-8AT.Scaf24, whole genome shotgun sequence (49524 bp)
Overview 1 RT 1: 41484-49522 bp Neighborhood of RT #1 [41484, 49522] COG3886 SSL2 DUF3427 MutT_pyrophosphohydrolase AE_Prim_S_like RVT-UG10 Feature: gene Location: 41484-44459 bp Feature: domain Description: COG3886 Location: 41517-42036 bp Feature: domain Description: COG3 886 Location: 41517-4203 6 bp Feature: domain Description: SSL2 Location: 42087-43497 bp Feature: domain Description: SSL2 Location: 42087-43 497 bp Feature: domain Description: DUF3427 Location: 43605-44442 bp Feature: domain Description: DUF3 427 Location: 43 605-44442 bp Feature: gene Location: 44474-44887 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 44504-44864 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 44504-44864 bp Feature: gene Location: 44959-47442 bp Feature: domain Description: AE_Prim_S_like Location: 45127-45487 bp Feature: domain Description: AE_Prim_S_like Location: 45127-45487 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 46273-46891 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 46273 -46891 bp Feature: gene Location: 47435-49522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3886 (HKD family nuclease ), SSL2 (COG1061), DUF3427 (pfam11907), MutT_pyrophosphohydrolase (cd03425), AE_Prim_S_like (cl01287), RVT-UG10

Seq: QUKL01000044.1 Lachnospiraceae bacterium TF10-8AT TF10-8AT.Scaf44, whole genome shotgun sequence (17572 bp)
Overview 1 RT 1: 7077-10484 bp Neighborhood of RT #1 [7077, 10573] GIIM RVT-GII HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 7077-7283 bp Feature: gene Location: 7440-7889 bp Feature: domain Description: GIIM Note: maturase Location: 7494-7710 bp Feature: domain Description: GIIM Note: maturase Location: 74 94 -7710 bp Feature: gene Location: 7914-8708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8106-8691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8106-8691 bp Feature: gene Location: 9362-9817 bp Feature: domain Description: HTH_XRE Location: 9407-9560 bp Feature: domain Description: HTH_XRE Location: 94 07-9560 bp Feature: domain Description: Rol_Rep_N Location: 9581-9812 bp Feature: domain Description: Rol_Rep_N Location: 9581-9812 bp Feature: gene Location: 9842-10573 bp Feature: domain Description: Rep_trans Location: 9869-10484 bp Feature: domain Description: Rep_trans Location: 9869-104 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)