myRT

myRT report for GCA_003481515.1_ASM348151v1

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Seq: QUKU01000010.1 Ruminococcus sp. OM08-7 OM08-7.Scaf10, whole genome shotgun sequence (150758 bp)
Overview 1 RT 1: 118919-123758 bp Neighborhood of RT #1 [118919, 124168] RVT-DGRs DUF3751 DUF2313 Feature: gene Location: 118919-119224 bp Feature: gene Location: 119302-119478 bp Feature: gene Location: 119841-121037 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 120048-120765 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 20048-1 20765 bp Feature: gene Location: 121469-123370 bp Feature: domain Description: DUF3751 Location: 121472-121928 bp Feature: domain Description: DUF3751 Location: 1 21 472-1 21 928 bp Feature: gene Location: 123386-124168 bp Feature: domain Description: DUF2313 Location: 123413-123758 bp Feature: domain Description: DUF231 3 Location: 1 2341 3-1 23758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571), DUF2313 (pfam10076)

Seq: QUKU01000003.1 Ruminococcus sp. OM08-7 OM08-7.Scaf3, whole genome shotgun sequence (213763 bp)
Overview 1 RT 1: 167311-181127 bp Neighborhood of RT #1 [167311, 182956] PhdYeFM_antitox AdoMet_MTases COG4646 KOG1000 RVT_N RVT-GII GIIM ArdC LPD28 YodL LPD18 DUF3849 LPD16 Feature: gene Location: 167311-167583 bp Feature: domain Description: PhdYeFM_antitox Location: 167332-167485 bp Feature: domain Description: PhdYeFM_antitox Location: 167332 -167485 bp Feature: gene Location: 167672-174844 bp Feature: domain Description: AdoMet_MTases Location: 171245-171593 bp Feature: domain Description: AdoMet_MTases Location: 1712 45-171593 bp Feature: domain Description: COG4646 Location: 171791-174347 bp Feature: domain Description: COG4646 Location: 171791-174347 bp Feature: domain Description: KOG1000 Location: 174701-174827 bp Feature: domain Description: KOG1000 Location: 174701-17482 7 bp Feature: gene Location: 175422-177092 bp Feature: domain Description: RVT_N Location: 175467-175710 bp Feature: domain Description: RVT_N Location: 175467-175710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175755-176403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175755-176403 bp Feature: domain Description: GIIM Note: maturase Location: 176457-176688 bp Feature: domain Description: GIIM Note: maturase Location: 176457-176688 bp Feature: gene Location: 177093-178142 bp Feature: gene Location: 178214-182956 bp Feature: domain Description: ArdC Location: 178424-179006 bp Feature: domain Description: ArdC Location: 17842 4-179006 bp Feature: domain Description: LPD28 Location: 179168-179441 bp Feature: domain Description: LPD2 8 Location: 179168-179441 bp Feature: domain Description: YodL Location: 179543-179840 bp Feature: domain Description: YodL Location: 179543-179840 bp Feature: domain Description: LPD18 Location: 179888-180128 bp Feature: domain Description: LPD18 Location: 179888-18012 8 bp Feature: domain Description: DUF3849 Location: 180188-180563 bp Feature: domain Description: DUF3849 Location: 180188-180563 bp Feature: domain Description: LPD16 Location: 180887-181127 bp Feature: domain Description: LPD16 Location: 180887-18112 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), AdoMet_MTases (cl17173), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ArdC (COG4227), LPD28 (pfam18843), YodL (pfam14191)
LPD18 (pfam18832), DUF3849 (pfam12960), LPD16 (pfam18830)

Seq: QUKU01000030.1 Ruminococcus sp. OM08-7 OM08-7.Scaf30, whole genome shotgun sequence (66333 bp)
Overview 1 RT 1: 59449-63865 bp Neighborhood of RT #1 [59449, 63865] RVT-DGRs Feature: gene Location: 59449-61752 bp Feature: gene Location: 61912-62100 bp Feature: gene Location: 62163-63392 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62445-63114 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62445-63 114 bp Feature: gene Location: 63337-63678 bp Feature: gene Location: 63692-63865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUKU01000005.1 Ruminococcus sp. OM08-7 OM08-7.Scaf5, whole genome shotgun sequence (188957 bp)
Overview 1 RT 1: 75827-78772 bp Neighborhood of RT #1 [75827, 78783] RVT-DGRs Avd_like Feature: gene Location: 75827-76210 bp Feature: gene Location: 76277-76660 bp Feature: gene Location: 76896-78053 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77106-77766 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77106-77766 bp Feature: gene Location: 78212-78385 bp Feature: gene Location: 78412-78783 bp Feature: domain Description: Avd_like Location: 78466-78772 bp Feature: domain Description: Avd_like Location: 784 66-78772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: QUKU01000070.1 Ruminococcus sp. OM08-7 OM08-7.Scaf70, whole genome shotgun sequence (3110 bp)
Overview 1 RT 1: 138-3103 bp Neighborhood of RT #1 [138, 3108] RVT_N RVT-GII GIIM HipB COG2932 Feature: gene Location: 138-1607 bp Feature: domain Description: RVT_N Location: 183-420 bp Feature: domain Description: RVT_N Location: 183-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471-1119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471-1119 bp Feature: domain Description: GIIM Note: maturase Location: 1170-1404 bp Feature: domain Description: GIIM Note: maturase Location: 1170-1404 bp Feature: gene Location: 2434-3108 bp Feature: domain Description: HipB Location: 2446-2665 bp Feature: domain Description: HipB Location: 2446-2665 bp Feature: domain Description: COG2932 Location: 2818-3103 bp Feature: domain Description: COG2932 Location: 2818-3103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains )