myRT

myRT report for GCA_003481565.1_ASM348156v1

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Seq: QUKX01000015.1 Firmicutes bacterium OM08-11AC OM08-11AC.Scaf15, whole genome shotgun sequence (100298 bp)
Overview 1 RT 1: 38157-41429 bp Neighborhood of RT #1 [38157, 41429] RVT-DGRs PHA00330 Feature: gene Location: 38157-38501 bp Feature: gene Location: 38566-39189 bp Feature: gene Location: 39026-39961 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39071-39551 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39071 -39551 bp Feature: gene Location: 40052-41020 bp Feature: domain Description: PHA00330 Location: 40211-40631 bp Feature: domain Description: PHA00330 Location: 4021 1 -40631 bp Feature: gene Location: 41268-41429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PHA00330 (putative replication initiation protein)

Seq: QUKX01000017.1 Firmicutes bacterium OM08-11AC OM08-11AC.Scaf17, whole genome shotgun sequence (86963 bp)
Overview 1 RT 1: 43533-47969 bp Neighborhood of RT #1 [43533, 47992] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 43533-45338 bp Feature: gene Location: 45465-45617 bp Feature: gene Location: 45623-46915 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45929-46631 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4592 9-46631 bp Feature: gene Location: 47158-47292 bp Feature: gene Location: 47570-47992 bp Feature: domain Description: Phage_holin_4_1 Location: 47615-47969 bp Feature: domain Description: Phage_holin_4_1 Location: 47615-47969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: QUKX01000019.1 Firmicutes bacterium OM08-11AC OM08-11AC.Scaf19, whole genome shotgun sequence (80034 bp)
Overview 1 RT 1: 30612-34647 bp Neighborhood of RT #1 [30612, 34647] IME4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 30612-31151 bp Feature: domain Description: IME4 Location: 30639-31134 bp Feature: domain Description: IME4 Location: 3 063 9-3 113 4 bp Feature: gene Location: 31193-31495 bp Feature: gene Location: 31571-33403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31835-32666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 183 5-3 2666 bp Feature: domain Description: Intron_maturas2 Location: 32738-33053 bp Feature: domain Description: Intron_maturas2 Location: 3 273 8-3 3 053 bp Feature: domain Description: HNHc Note: nucleases Location: 33200-33374 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 200-3 3 3 74 bp Feature: gene Location: 33649-33864 bp Feature: gene Location: 33979-34647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IME4 (COG4725), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUKX01000005.1 Firmicutes bacterium OM08-11AC OM08-11AC.Scaf5, whole genome shotgun sequence (220755 bp)
Overview 1 RT 1: 97961-113264 bp Neighborhood of RT #1 [97961, 113281] ArdC LPD28 YodL LPD18 DUF3849 LPD16 RVT_N RVT-GII GIIM AdoMet_MTases COG4646 KOG1000 Feature: gene Location: 97961-102703 bp Feature: domain Description: ArdC Location: 98171-98753 bp Feature: domain Description: ArdC Location: 98171-98753 bp Feature: domain Description: LPD28 Location: 98915-99188 bp Feature: domain Description: LPD28 Location: 98915-99188 bp Feature: domain Description: YodL Location: 99290-99587 bp Feature: domain Description: YodL Location: 99290-99587 bp Feature: domain Description: LPD18 Location: 99635-99875 bp Feature: domain Description: LPD18 Location: 99635-99875 bp Feature: domain Description: DUF3849 Location: 99935-100310 bp Feature: domain Description: DUF384 9 Location: 99935-100310 bp Feature: domain Description: LPD16 Location: 100634-100874 bp Feature: domain Description: LPD16 Location: 100634 -100874 bp Feature: gene Location: 102775-103824 bp Feature: gene Location: 103825-105495 bp Feature: RT Description: RVT_N Location: 103870-104113 bp Feature: RT Description: RVT_N Location: 103870-104 113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104158-104806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 158-104 806 bp Feature: domain Description: GIIM Note: maturase Location: 104860-105091 bp Feature: domain Description: GIIM Note: maturase Location: 104 860-105091 bp Feature: gene Location: 105546-105716 bp Feature: gene Location: 106073-113281 bp Feature: domain Description: AdoMet_MTases Location: 109682-110030 bp Feature: domain Description: AdoMet_MTases Location: 109682-110030 bp Feature: domain Description: COG4646 Location: 110228-112784 bp Feature: domain Description: COG4 64 6 Location: 110228-112784 bp Feature: domain Description: KOG1000 Location: 113138-113264 bp Feature: domain Description: KOG1000 Location: 113138-113264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AdoMet_MTases (cl17173), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), ArdC (COG4227), LPD28 (pfam18843), YodL (pfam14191), LPD18 (pfam18832)
DUF3849 (pfam12960), LPD16 (pfam18830)