myRT

myRT report for GCA_003481625.1_ASM348162v1

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Seq: QULG01000011.1 Ruminococcus sp. OM05-7 OM05-7.Scaf11, whole genome shotgun sequence (107137 bp)
Overview 1 RT 1: 78812-85339 bp Neighborhood of RT #1 [78812, 85339] AAA_15 TOPRIM_OLD RVT-Retrons DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 78812-80653 bp Feature: domain Description: AAA_15 Location: 78815-80015 bp Feature: domain Description: AAA_1 5 Location: 7881 5-8001 5 bp Feature: domain Description: TOPRIM_OLD Location: 80207-80426 bp Feature: domain Description: TOPRIM_OLD Location: 80207-80426 bp Feature: gene Location: 80756-81676 bp Feature: gene Location: 81838-82857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81988-82546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 988-82546 bp Feature: gene Location: 83349-84719 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 83493-83931 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 83493-83931 bp Feature: domain Description: Transposase_20 Location: 84228-84492 bp Feature: domain Description: Transposase_20 Location: 84228-84492 bp Feature: gene Location: 84956-85339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons, DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: QULG01000034.1 Ruminococcus sp. OM05-7 OM05-7.Scaf34, whole genome shotgun sequence (41899 bp)
Overview 1 RT 1: 36620-41842 bp Neighborhood of RT #1 [36620, 41895] RVT-GII Feature: gene Location: 36620-40624 bp Feature: gene Location: 40793-41035 bp Feature: gene Location: 41143-41895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41461-41842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41461-41842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QULG01000045.1 Ruminococcus sp. OM05-7 OM05-7.Scaf45, whole genome shotgun sequence (22724 bp)
Overview 1 RT 1: 2-2300 bp Neighborhood of RT #1 [2, 2323] RVT-GII AgaS Feature: gene Location: 2-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203-584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 -584 bp Feature: gene Location: 998-1135 bp Feature: gene Location: 1262-2323 bp Feature: domain Description: AgaS Location: 1280-2300 bp Feature: domain Description: AgaS Location: 1280-23 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AgaS (COG2222)

Seq: QULG01000046.1 Ruminococcus sp. OM05-7 OM05-7.Scaf46, whole genome shotgun sequence (21980 bp)
Overview 1 RT 1: 18942-21694 bp Neighborhood of RT #1 [18942, 21909] DUF111 PurR RVT-GII GIIM Feature: gene Location: 18942-19898 bp Feature: domain Description: DUF111 Location: 19050-19890 bp Feature: domain Description: DUF111 Location: 19050-19890 bp Feature: gene Location: 20079-21137 bp Feature: domain Description: PurR Location: 20082-21093 bp Feature: domain Description: PurR Location: 20082-21093 bp Feature: gene Location: 21214-21909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21217-21424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21217-214 24 bp Feature: domain Description: GIIM Note: maturase Location: 21478-21694 bp Feature: domain Description: GIIM Note: maturase Location: 214 78-21694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF111 (pfam01969), PurR (COG1609), RVT-GII, GIIM (pfam08388)

Seq: QULG01000054.1 Ruminococcus sp. OM05-7 OM05-7.Scaf54, whole genome shotgun sequence (12111 bp)
Overview 1 RT 1: 96-2795 bp Neighborhood of RT #1 [96, 2800] RVT-GII GIIM COG5263 MurNAc-LAA NifX SlpA Feature: gene Location: 96-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102-288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102-288 bp Feature: domain Description: GIIM Note: maturase Location: 345-567 bp Feature: domain Description: GIIM Note: maturase Location: 345 -5 67 bp Feature: gene Location: 897-1865 bp Feature: domain Description: COG5263 Location: 1008-1239 bp Feature: domain Description: COG5 263 Location: 1008-1239 bp Feature: domain Description: MurNAc-LAA Location: 1248-1848 bp Feature: domain Description: MurNAc-LAA Location: 1248-1848 bp Feature: gene Location: 1937-2800 bp Feature: domain Description: NifX Location: 1940-2273 bp Feature: domain Description: NifX Location: 1940-2273 bp Feature: domain Description: SlpA Location: 2390-2795 bp Feature: domain Description: SlpA Location: 2390-2795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5263 (Glucan-binding domain (YG repeat) ), MurNAc-LAA (cl02713), NifX (COG1433), SlpA (COG1047)

Seq: QULG01000075.1 Ruminococcus sp. OM05-7 OM05-7.Scaf75, whole genome shotgun sequence (3656 bp)
Overview 1 RT 1: 1084-3599 bp Neighborhood of RT #1 [1084, 3655] RVT-GII RVT-GII Feature: gene Location: 1084-1413 bp Feature: gene Location: 1556-1699 bp Feature: gene Location: 1708-2493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1963-2464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196 3-246 4 bp Feature: gene Location: 2600-2743 bp Feature: gene Location: 2795-2983 bp Feature: gene Location: 3014-3655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3218-3599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3218-3599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QULG01000087.1 Ruminococcus sp. OM05-7 OM05-7.Scaf87, whole genome shotgun sequence (1722 bp)
Overview 1 RT 1: 133-1567 bp Neighborhood of RT #1 [133, 1665] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 133-303 bp Feature: gene Location: 395-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-581 bp Feature: domain Description: GIIM Note: maturase Location: 662-866 bp Feature: domain Description: GIIM Note: maturase Location: 662-866 bp Feature: gene Location: 1003-1665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-1270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-127 0 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1567 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)