myRT

myRT report for GCA_003481655.1_ASM348165v1

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Seq: QULK01000001.1 Ruminococcus sp. OM05-10BH OM05-10BH.Scaf1, whole genome shotgun sequence (313855 bp)
Overview 1 RT 1: 57312-65069 bp Neighborhood of RT #1 [57312, 65071] PrgI RVT-GII HNHc Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Maff2 Feature: gene Location: 57312-57659 bp Feature: domain Description: PrgI Location: 57330-57600 bp Feature: domain Description: PrgI Location: 57330-57600 bp Feature: gene Location: 57674-58546 bp Feature: gene Location: 58819-59982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58822-59167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58822-591 67 bp Feature: domain Description: HNHc Note: nucleases Location: 59713-59866 bp Feature: domain Description: HNHc Note: nucleases Location: 5971 3-59866 bp Feature: gene Location: 60186-61421 bp Feature: domain Description: Phage_int_SAM_1 Location: 60558-60759 bp Feature: domain Description: Phage_int_SAM_1 Location: 60558-60759 bp Feature: domain Description: INT_RitA_C_like Location: 60852-61395 bp Feature: domain Description: INT_RitA_C_like Location: 60852-61 395 bp Feature: gene Location: 61471-62025 bp Feature: gene Location: 61414-62397 bp Feature: domain Description: INT_RitB_C_like Location: 61750-62323 bp Feature: domain Description: INT_RitB_C_like Location: 61 750-62323 bp Feature: gene Location: 62378-63388 bp Feature: domain Description: Phage_int_SAM_1 Location: 62432-62669 bp Feature: domain Description: Phage_int_SAM_1 Location: 62432-62669 bp Feature: domain Description: INT_RitC_C_like Location: 62759-63302 bp Feature: domain Description: INT_RitC_C_like Location: 62759-63302 bp Feature: gene Location: 63426-64220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63759-64152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63759-641 52 bp Feature: gene Location: 64263-64523 bp Feature: gene Location: 64940-65071 bp Feature: domain Description: Maff2 Location: 64943-65069 bp Feature: domain Description: Maff2 Location: 64943-65069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), Maff2 (pfam12750)

Seq: QULK01000019.1 Ruminococcus sp. OM05-10BH OM05-10BH.Scaf19, whole genome shotgun sequence (75934 bp)
Overview 1 RT 1: 24726-32762 bp Neighborhood of RT #1 [24726, 32809] T4SS-DNA_transf RVT-GII group_II_RT_mat VirD4 Phage_lysozyme2 Feature: gene Location: 24726-26021 bp Feature: domain Description: T4SS-DNA_transf Location: 25194-26010 bp Feature: domain Description: T4SS-DNA_transf Location: 2 5194-2 6010 bp Feature: gene Location: 26301-26546 bp Feature: gene Location: 26617-28215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26911-27697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6911-2 7697 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 27898-28039 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 7898-2 8039 bp Feature: gene Location: 28284-29339 bp Feature: domain Description: VirD4 Location: 28347-28773 bp Feature: domain Description: VirD4 Location: 2 8347-2 8773 bp Feature: gene Location: 29426-32809 bp Feature: domain Description: Phage_lysozyme2 Location: 32321-32762 bp Feature: domain Description: Phage_lysozyme2 Location: 32 32 1-32 762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, group_II_RT_mat (TIGR04416), VirD4 (COG3505), Phage_lysozyme2 (pfam18013)

Seq: QULK01000048.1 Ruminococcus sp. OM05-10BH OM05-10BH.Scaf48, whole genome shotgun sequence (2809 bp)
Overview 1 RT 1: 741-2508 bp Neighborhood of RT #1 [741, 2714] RVT-GII HNHc Feature: gene Location: 741-2714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077-1815 bp Feature: domain Description: HNHc Note: nucleases Location: 2370-2508 bp Feature: domain Description: HNHc Note: nucleases Location: 23 70-2508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QULK01000054.1 Ruminococcus sp. OM05-10BH OM05-10BH.Scaf54, whole genome shotgun sequence (1969 bp)
Overview 1 RT 1: 558-1785 bp Neighborhood of RT #1 [558, 1874] RVT-GII GIIM Feature: gene Location: 558-1874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819-1512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819-1512 bp Feature: domain Description: GIIM Note: maturase Location: 1575-1785 bp Feature: domain Description: GIIM Note: maturase Location: 1575-1785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)