myRT

myRT report for GCA_003482245.1_ASM348224v1

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Seq: QUMH01000012.1 Clostridium sp. OF09-10 OF09-10.Scaf12, whole genome shotgun sequence (119505 bp)
Overview 1 RT 1: 66887-70538 bp Neighborhood of RT #1 [66887, 70538] Phage_XkdX RVT-DGRs Feature: gene Location: 66887-67039 bp Feature: domain Description: Phage_XkdX Location: 66893-66998 bp Feature: domain Description: Phage_XkdX Location: 66893-66998 bp Feature: gene Location: 67041-67427 bp Feature: gene Location: 67803-68540 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 68064-68460 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 68064-68460 bp Feature: gene Location: 68954-69808 bp Feature: gene Location: 69822-70538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs

Seq: QUMH01000037.1 Clostridium sp. OF09-10 OF09-10.Scaf37, whole genome shotgun sequence (20030 bp)
Overview 1 RT 1: 2215-7616 bp Neighborhood of RT #1 [2215, 7616] RVT-Retrons Feature: gene Location: 2215-2370 bp Feature: gene Location: 2414-2563 bp Feature: gene Location: 2624-4276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2759-3350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 759-3350 bp Feature: gene Location: 4467-5825 bp Feature: gene Location: 6048-7616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QUMH01000054.1 Clostridium sp. OF09-10 OF09-10.Scaf54, whole genome shotgun sequence (5852 bp)
Overview 1 RT 1: 1776-5363 bp Neighborhood of RT #1 [1776, 5363] MalY HTH_XRE RVT-GII GIIM Feature: gene Location: 1776-2615 bp Feature: domain Description: MalY Location: 1785-2595 bp Feature: domain Description: MalY Location: 1785-2595 bp Feature: gene Location: 2926-3648 bp Feature: domain Description: HTH_XRE Location: 2953-3121 bp Feature: domain Description: HTH_XRE Location: 2953 -3 121 bp Feature: gene Location: 3944-5233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4154-4769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4154-4769 bp Feature: domain Description: GIIM Note: maturase Location: 4829-5057 bp Feature: domain Description: GIIM Note: maturase Location: 4829-5057 bp Feature: gene Location: 5220-5363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MalY (COG1168), HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388)

Seq: QUMH01000059.1 Clostridium sp. OF09-10 OF09-10.Scaf59, whole genome shotgun sequence (2575 bp)
Overview 1 RT 1: 91-2384 bp Neighborhood of RT #1 [91, 2384] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 91-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1186 bp Feature: domain Description: Intron_maturas2 Location: 1258-1573 bp Feature: domain Description: Intron_maturas2 Location: 1258-1573 bp Feature: domain Description: HNHc Note: nucleases Location: 1720-1894 bp Feature: domain Description: HNHc Note: nucleases Location: 1720-1894 bp Feature: gene Location: 2169-2384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUMH01000009.1 Clostridium sp. OF09-10 OF09-10.Scaf9, whole genome shotgun sequence (151991 bp)
Overview 1 RT 1: 95841-99402 bp Neighborhood of RT #1 [95841, 99410] FixB RVT-GII YfdV Feature: gene Location: 95841-96890 bp Feature: domain Description: FixB Location: 95865-96867 bp Feature: domain Description: FixB Location: 95 865 -96867 bp Feature: gene Location: 96977-97210 bp Feature: gene Location: 97473-97868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97791-97839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97791-97839 bp Feature: gene Location: 97982-98188 bp Feature: gene Location: 98493-99410 bp Feature: domain Description: YfdV Location: 98529-99402 bp Feature: domain Description: YfdV Location: 985 29-99402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FixB (COG2025), RVT-GII, YfdV (COG0679)