myRT

myRT report for GCA_003482275.1_ASM348227v1

Download annotations/find similar RTs

Seq: QUMI01000012.1 Clostridiaceae bacterium OF09-1 OF09-1.Scaf12, whole genome shotgun sequence (97465 bp)
Overview 1 RT 1: 51813-56325 bp Neighborhood of RT #1 [51813, 56336] CcmA NosY RVT-GII GIIM ZnuB Feature: gene Location: 51813-52736 bp Feature: domain Description: CcmA Location: 51825-52716 bp Feature: domain Description: CcmA Location: 51 825-5271 6 bp Feature: gene Location: 52729-53436 bp Feature: domain Description: NosY Location: 52771-53311 bp Feature: domain Description: NosY Location: 52771 -5331 1 bp Feature: gene Location: 54093-54755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54129-54297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 29-54297 bp Feature: domain Description: GIIM Note: maturase Location: 54357-54576 bp Feature: domain Description: GIIM Note: maturase Location: 54357-54576 bp Feature: gene Location: 54859-55488 bp Feature: gene Location: 55485-56336 bp Feature: domain Description: ZnuB Location: 55509-56325 bp Feature: domain Description: ZnuB Location: 55509-56325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), NosY (COG1277), RVT-GII, GIIM (pfam08388), ZnuB (COG1108)

Seq: QUMI01000016.1 Clostridiaceae bacterium OF09-1 OF09-1.Scaf16, whole genome shotgun sequence (60251 bp)
Overview 1 RT 1: 41555-47296 bp Neighborhood of RT #1 [41555, 47325] Recombinase Zn_ribbon_recom DUF4368 SR_TndX_transposase RVT_N RVT-GII GIIM VirD4 DUF3801 Feature: gene Location: 41555-42760 bp Feature: domain Description: Recombinase Location: 41588-41783 bp Feature: domain Description: Recombinase Location: 41588-41783 bp Feature: domain Description: Zn_ribbon_recom Location: 41828-42014 bp Feature: domain Description: Zn_ribbon_recom Location: 4182 8-42 014 bp Feature: domain Description: DUF4368 Location: 42290-42485 bp Feature: domain Description: DUF4368 Location: 42 2 90-42 485 bp Feature: gene Location: 42814-43824 bp Feature: domain Description: SR_TndX_transposase Location: 43222-43651 bp Feature: domain Description: SR_TndX_transposase Location: 432 2 2 -43651 bp Feature: gene Location: 43959-45623 bp Feature: domain Description: RVT_N Location: 44004-44247 bp Feature: domain Description: RVT_N Location: 44004-442 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44292-44943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442 92 -44943 bp Feature: domain Description: GIIM Note: maturase Location: 44994-45228 bp Feature: domain Description: GIIM Note: maturase Location: 44994-452 2 8 bp Feature: gene Location: 46205-46858 bp Feature: domain Description: VirD4 Location: 46445-46850 bp Feature: domain Description: VirD4 Location: 46445-46850 bp Feature: gene Location: 46855-47325 bp Feature: domain Description: DUF3801 Location: 46924-47296 bp Feature: domain Description: DUF3801 Location: 4692 4-472 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), SR_TndX_transposase (cd03770), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirD4 (COG3505), DUF3801 (pfam12687)

Seq: QUMI01000049.1 Clostridiaceae bacterium OF09-1 OF09-1.Scaf49, whole genome shotgun sequence (1903 bp)
Overview 1 RT 1: 424-1657 bp Neighborhood of RT #1 [424, 1836] RVT-GII GIIM Feature: gene Location: 424-1836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-13 96 bp Feature: domain Description: GIIM Note: maturase Location: 1447-1657 bp Feature: domain Description: GIIM Note: maturase Location: 1447-1657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)