myRT

myRT report for GCA_003483885.1_ASM348388v1

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Seq: DMXI01000354.1 TPA_asm: Microscillaceae bacterium isolate UBA11690 contig_1400, whole genome shotgun sequence (29237 bp)
Overview 1 RT 1: 10351-17546 bp Neighborhood of RT #1 [10351, 17728] CheY RVT-Retrons ExoI_N sbcB Feature: gene Location: 10351-12117 bp Feature: domain Description: CheY Location: 11044-11449 bp Feature: domain Description: CheY Location: 1 1 044-1 1 449 bp Feature: gene Location: 12149-12781 bp Feature: gene Location: 12782-14824 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13016-13616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 301 6-1 361 6 bp Feature: gene Location: 14885-15043 bp Feature: gene Location: 16232-17728 bp Feature: domain Description: ExoI_N Location: 16271-16814 bp Feature: domain Description: ExoI_N Location: 1 6271 -1 681 4 bp Feature: domain Description: sbcB Note: exonuclease Location: 17183-17546 bp Feature: domain Description: sbcB Note: exonuclease Location: 1 71 83-1 7546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), RVT-Retrons, ExoI_N (cd06138), sbcB (PRK11779)

Seq: DMXI01000524.1 TPA_asm: Microscillaceae bacterium isolate UBA11690 contig_16487, whole genome shotgun sequence (2921 bp)
Overview 1 RT 1: 236-2675 bp Neighborhood of RT #1 [236, 2920] RVT-UNC zf-RVT Feature: gene Location: 236-2920 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 809-1439 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 809-1439 bp Feature: domain Description: zf-RVT Location: 2501-2675 bp Feature: domain Description: zf-RVT Location: 2 501-2 675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), zf-RVT (pfam13966)

Seq: DMXI01000343.1 TPA_asm: Microscillaceae bacterium isolate UBA11690 contig_2369, whole genome shotgun sequence (38861 bp)
Overview 1 RT 1: 5297-11617 bp Neighborhood of RT #1 [5297, 11617] TonB_C RVT-Retrons Feature: gene Location: 5297-5740 bp Feature: domain Description: TonB_C Location: 5504-5735 bp Feature: domain Description: TonB_C Location: 5504-573 5 bp Feature: gene Location: 6058-7698 bp Feature: gene Location: 7821-9209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8364-8979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83 64-8979 bp Feature: gene Location: 9425-11236 bp Feature: gene Location: 11405-11617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB_C (pfam03544), RVT-Retrons

Seq: DMXI01000198.1 TPA_asm: Microscillaceae bacterium isolate UBA11690 contig_2962, whole genome shotgun sequence (14525 bp)
Overview 1 RT 1: 8800-14143 bp Neighborhood of RT #1 [8800, 14143] DDE_Tnp_IS66 RVT_N RVT-GII RVT-GII GIIM HNHc RVT-GII GIIM HNHc Feature: gene Location: 8800-9078 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8803-9010 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8803-9010 bp Feature: gene Location: 9097-9240 bp Feature: gene Location: 9608-10354 bp Feature: domain Description: RVT_N Location: 9650-9896 bp Feature: domain Description: RVT_N Location: 9650-9896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9938-10325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9938-10325 bp Feature: gene Location: 10940-12604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11222-11906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11222-11906 bp Feature: domain Description: GIIM Note: maturase Location: 11972-12191 bp Feature: domain Description: GIIM Note: maturase Location: 11972-12191 bp Feature: domain Description: HNHc Note: nucleases Location: 12425-12581 bp Feature: domain Description: HNHc Note: nucleases Location: 124 25-12581 bp Feature: gene Location: 12691-13725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12715-13033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12715-13033 bp Feature: domain Description: GIIM Note: maturase Location: 13132-13363 bp Feature: domain Description: GIIM Note: maturase Location: 13132-13363 bp Feature: domain Description: HNHc Note: nucleases Location: 13555-13720 bp Feature: domain Description: HNHc Note: nucleases Location: 13555-13720 bp Feature: gene Location: 13973-14143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DMXI01000352.1 TPA_asm: Microscillaceae bacterium isolate UBA11690 contig_545, whole genome shotgun sequence (21676 bp)
Overview 1 RT 1: 14871-20431 bp Neighborhood of RT #1 [14871, 20433] DUF3592 TTHA1623-like_MBL-fold PRK00566 RVT-UNC ddl AraC_E_bind Feature: gene Location: 14871-15329 bp Feature: domain Description: DUF3592 Location: 14922-15276 bp Feature: domain Description: DUF35 92 Location: 14922-15 276 bp Feature: gene Location: 15342-15998 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 15354-15972 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 15 35 4-15 972 bp Feature: gene Location: 16118-18469 bp Feature: domain Description: PRK00566 Location: 16961-17048 bp Feature: domain Description: PRK005 66 Location: 16961-17048 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 17258-17660 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1725 8-17660 bp Feature: gene Location: 18883-19947 bp Feature: domain Description: ddl Location: 19123-19741 bp Feature: domain Description: ddl Location: 19123-19741 bp Feature: gene Location: 19960-20433 bp Feature: domain Description: AraC_E_bind Location: 19966-20431 bp Feature: domain Description: AraC_E_bind Location: 19966-20431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3592 (pfam12158), TTHA1623-like_MBL-fold (cd16322), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG19/RVT-DGRs/RVT-UG3/RVT-UG25(RVT-UNC), ddl (PRK01966), AraC_E_bind (smart00871)

Seq: DMXI01000165.1 TPA_asm: Microscillaceae bacterium isolate UBA11690 contig_5706, whole genome shotgun sequence (7800 bp)
Overview 1 RT 1: 3395-7466 bp Neighborhood of RT #1 [3395, 7466] LRR_1 RVT-GII GIIM HNHc Feature: gene Location: 3395-4066 bp Feature: domain Description: LRR_1 Location: 3638-3866 bp Feature: domain Description: LRR_1 Location: 36 38-386 6 bp Feature: gene Location: 4693-5124 bp Feature: gene Location: 5388-6881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5445-6156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5445-6 156 bp Feature: domain Description: GIIM Note: maturase Location: 6255-6489 bp Feature: domain Description: GIIM Note: maturase Location: 6 255-6 489 bp Feature: domain Description: HNHc Note: nucleases Location: 6687-6846 bp Feature: domain Description: HNHc Note: nucleases Location: 6 6 87-6 846 bp Feature: gene Location: 7191-7466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_1 (sd00031), RVT-GII, GIIM (pfam08388), HNHc (smart00507)