myRT

myRT report for GCA_003485665.1_ASM348566v1

Download annotations/find similar RTs

Seq: DNIL01000199.1 TPA_asm: Armatimonadetes bacterium isolate UBA10988 contig_26454, whole genome shotgun sequence (28261 bp)
Overview 1 RT 1: 9054-15554 bp Neighborhood of RT #1 [9054, 15554] RtcB RVT-Retrons PRK15076 Feature: gene Location: 9054-10493 bp Feature: domain Description: RtcB Location: 9381-10461 bp Feature: domain Description: RtcB Location: 9381 -1 0461 bp Feature: gene Location: 10500-11834 bp Feature: gene Location: 12270-13145 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12375-12939 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2375-1 2939 bp Feature: gene Location: 13204-14532 bp Feature: domain Description: PRK15076 Location: 13207-14515 bp Feature: domain Description: PRK1 5076 Location: 1 3207-1 451 5 bp Feature: gene Location: 14592-15554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RtcB (pfam01139), RVT-Retrons, PRK15076 (alpha-galactosidase; Provisional)

Seq: DNIL01000355.1 TPA_asm: Armatimonadetes bacterium isolate UBA10988 contig_63752, whole genome shotgun sequence (3219 bp)
Overview 1 RT 1: 3-3155 bp Neighborhood of RT #1 [3, 3217] DPPIV_N Peptidase_S9 Cas2_I_II_III RVT-CRISPR Feature: gene Location: 3-1778 bp Feature: domain Description: DPPIV_N Location: 24-918 bp Feature: domain Description: DPPIV_N Location: 2 4-918 bp Feature: domain Description: Peptidase_S9 Location: 1188-1752 bp Feature: domain Description: Peptidase_S9 Location: 1188-1752 bp Feature: gene Location: 1981-2283 bp Feature: domain Description: Cas2_I_II_III Location: 1999-2224 bp Feature: domain Description: Cas2 _I_II_III Location: 1999-2 2 2 4 bp Feature: gene Location: 2339-3217 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2549-3155 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 549-3155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DPPIV_N (pfam00930), Peptidase_S9 (pfam00326), Cas2_I_II_III (cl11442), RVT-CRISPR