myRT

myRT report for GCA_003485835.1_ASM348583v1

Download annotations/find similar RTs

Seq: DNHQ01000177.1 TPA_asm: Marinilabiliales bacterium isolate UBA10188 contig_15808, whole genome shotgun sequence (3885 bp)
Overview 1 RT 1: 742-3444 bp Neighborhood of RT #1 [742, 3866] YcjR RVT-UG2 Feature: gene Location: 742-1458 bp Feature: domain Description: YcjR Location: 778-1444 bp Feature: domain Description: YcjR Location: 778-1 444 bp Feature: gene Location: 1962-2105 bp Feature: gene Location: 2295-3866 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2529-3444 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2529-3444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjR (COG1082), RVT-UG2

Seq: DNHQ01000100.1 TPA_asm: Marinilabiliales bacterium isolate UBA10188 contig_196078, whole genome shotgun sequence (12426 bp)
Overview 1 RT 1: 2090-8242 bp Neighborhood of RT #1 [2090, 8244] MORN_2 MORN_2 RVT-GII GIIM DUF333 KOG1543 PKD Por_Secre_tail Feature: gene Location: 2090-2497 bp Feature: domain Description: MORN_2 Location: 2282-2330 bp Feature: domain Description: MORN_2 Location: 2 2 82 -2 330 bp Feature: domain Description: MORN_2 Location: 2435-2483 bp Feature: domain Description: MORN_2 Location: 2 435-2 483 bp Feature: gene Location: 2571-2975 bp Feature: gene Location: 3419-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3770-4385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3770-4385 bp Feature: domain Description: GIIM Note: maturase Location: 4442-4664 bp Feature: domain Description: GIIM Note: maturase Location: 4442 -4664 bp Feature: gene Location: 5033-5191 bp Feature: gene Location: 5287-8244 bp Feature: domain Description: DUF333 Location: 5356-5491 bp Feature: domain Description: DUF333 Location: 5356-5491 bp Feature: domain Description: KOG1543 Location: 5593-6412 bp Feature: domain Description: KOG1543 Location: 5593-6412 bp Feature: domain Description: PKD Location: 7252-7462 bp Feature: domain Description: PKD Location: 72 52 -7462 bp Feature: domain Description: Por_Secre_tail Location: 8026-8242 bp Feature: domain Description: Por_Secre_tail Location: 802 6-82 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MORN_2 (pfam07661), RVT-GII, GIIM (pfam08388), DUF333 (pfam03891), KOG1543 (KOG1543, Cysteine proteinase Cathepsin L ), PKD (smart00089), Por_Secre_tail (TIGR04183)

Seq: DNHQ01000216.1 TPA_asm: Marinilabiliales bacterium isolate UBA10188 contig_98107, whole genome shotgun sequence (34026 bp)
Overview 1 RT 1: 2-8115 bp Neighborhood of RT #1 [2, 8115] Apolipoprotein Apolipoprotein RVT-DGRs Feature: gene Location: 2-1480 bp Feature: domain Description: Apolipoprotein Location: 131-290 bp Feature: domain Description: Apolipoprotein Location: 13 1-290 bp Feature: domain Description: Apolipoprotein Location: 566-929 bp Feature: domain Description: Apolipoprotein Location: 566-929 bp Feature: gene Location: 1512-3230 bp Feature: gene Location: 3477-4742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3687-4281 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 687-4281 bp Feature: gene Location: 4754-4948 bp Feature: gene Location: 4951-8115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Apolipoprotein (pfam01442), RVT-DGRs