myRT

myRT report for GCA_003486305.1_ASM348630v1

Download annotations/find similar RTs

Seq: DNGJ01000321.1 TPA_asm: Cyanobacteria bacterium UBA11371 contig_216, whole genome shotgun sequence (25892 bp)
Overview 1 RT 1: 22776-25879 bp Neighborhood of RT #1 [22776, 25890] InsQ RVT_N RVT-GII Feature: gene Location: 22776-23606 bp Feature: domain Description: InsQ Location: 22785-23547 bp Feature: domain Description: InsQ Location: 22785-23547 bp Feature: gene Location: 24902-25156 bp Feature: gene Location: 25069-25890 bp Feature: RT Description: RVT_N Location: 25093-25288 bp Feature: RT Description: RVT_N Location: 25093-25288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25330-25879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25330-25879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII

Seq: DNGJ01000562.1 TPA_asm: Cyanobacteria bacterium UBA11371 contig_246, whole genome shotgun sequence (36289 bp)
Overview 1 RT 1: 26346-31978 bp Neighborhood of RT #1 [26346, 32007] Y1_Tnp InsQ RVT_N RVT-GII GIIM McrA TPR_12 COG4995 Feature: gene Location: 26346-26759 bp Feature: domain Description: Y1_Tnp Location: 26382-26742 bp Feature: domain Description: Y1_Tnp Location: 2 6382 -2 6742 bp Feature: gene Location: 26834-28207 bp Feature: domain Description: InsQ Location: 26837-28097 bp Feature: domain Description: InsQ Location: 2 6837-2 8097 bp Feature: gene Location: 28495-30219 bp Feature: RT Description: RVT_N Location: 28711-28957 bp Feature: RT Description: RVT_N Location: 2 8711-2 8957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29008-29635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9008-2 9635 bp Feature: domain Description: GIIM Note: maturase Location: 29692-29884 bp Feature: domain Description: GIIM Note: maturase Location: 2 9692 -2 9884 bp Feature: domain Description: McrA Location: 29899-30190 bp Feature: domain Description: McrA Location: 2 9899-30190 bp Feature: gene Location: 30426-30779 bp Feature: gene Location: 31120-32007 bp Feature: domain Description: TPR_12 Location: 31225-31330 bp Feature: domain Description: TPR_12 Location: 312 2 5-31330 bp Feature: domain Description: COG4995 Location: 31369-31978 bp Feature: domain Description: COG4995 Location: 31369-31978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TPR_12 (pfam13424), COG4995 (Uncharacterized conserved protein, contains CHAT domain )

Seq: DNGJ01000279.1 TPA_asm: Cyanobacteria bacterium UBA11371 contig_3022, whole genome shotgun sequence (17631 bp)
Overview 1 RT 1: 9571-17430 bp Neighborhood of RT #1 [9571, 17438] InsQ InsQ RVT_N RVT-GII McrA InsQ TPR Spy Feature: gene Location: 9571-9717 bp Feature: gene Location: 9756-11483 bp Feature: domain Description: InsQ Location: 9801-9966 bp Feature: domain Description: InsQ Location: 9801-9966 bp Feature: domain Description: InsQ Location: 10206-11376 bp Feature: domain Description: InsQ Location: 10206-113 76 bp Feature: gene Location: 12154-13785 bp Feature: RT Description: RVT_N Location: 12190-12421 bp Feature: RT Description: RVT_N Location: 12190-12421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12487-13144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12487-13 144 bp Feature: domain Description: McrA Location: 13378-13699 bp Feature: domain Description: McrA Location: 13 3 78-13 699 bp Feature: gene Location: 13996-15120 bp Feature: domain Description: InsQ Location: 14008-14980 bp Feature: domain Description: InsQ Location: 14008-14980 bp Feature: gene Location: 15240-17438 bp Feature: domain Description: TPR Location: 15249-15447 bp Feature: domain Description: TPR Location: 15249-15447 bp Feature: domain Description: Spy Location: 15522-17430 bp Feature: domain Description: Spy Location: 15522-1743 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), InsQ (COG0675), TPR (smart00028), Spy (COG3914)

Seq: DNGJ01000298.1 TPA_asm: Cyanobacteria bacterium UBA11371 contig_504, whole genome shotgun sequence (107130 bp)
Overview 1 RT 1: 53039-58533 bp Neighborhood of RT #1 [53039, 58559] RVT-GII Intron_maturas2 HNHc ProV Feature: gene Location: 53039-53200 bp Feature: gene Location: 53482-53610 bp Feature: gene Location: 54024-55985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54435-55230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 4 35-55230 bp Feature: domain Description: Intron_maturas2 Location: 55332-55569 bp Feature: domain Description: Intron_maturas2 Location: 55332-55569 bp Feature: domain Description: HNHc Note: nucleases Location: 55728-55917 bp Feature: domain Description: HNHc Note: nucleases Location: 55728-55917 bp Feature: gene Location: 56497-57198 bp Feature: gene Location: 57351-58559 bp Feature: domain Description: ProV Location: 57372-58533 bp Feature: domain Description: ProV Location: 57372-58533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ProV (COG4175)

Seq: DNGJ01000185.1 TPA_asm: Cyanobacteria bacterium UBA11371 contig_715, whole genome shotgun sequence (24167 bp)
Overview 1 RT 1: 16827-21592 bp Neighborhood of RT #1 [16827, 21592] NYN Rnc RVT-Retrons YjbI TPR Feature: gene Location: 16827-17597 bp Feature: domain Description: NYN Location: 16887-17280 bp Feature: domain Description: NYN Location: 16887-17280 bp Feature: gene Location: 17701-18414 bp Feature: domain Description: Rnc Location: 17746-18400 bp Feature: domain Description: Rnc Location: 17746-18400 bp Feature: gene Location: 18529-19941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19081-19699 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19081-19699 bp Feature: gene Location: 20282-21118 bp Feature: domain Description: YjbI Location: 20366-20726 bp Feature: domain Description: YjbI Location: 20366-20726 bp Feature: domain Description: TPR Location: 20759-20936 bp Feature: domain Description: TPR Location: 2075 9-20936 bp Feature: gene Location: 21269-21592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NYN (pfam01936), Rnc (COG0571), RVT-Retrons, YjbI (COG2346), TPR (smart00028)