myRT

myRT report for GCA_003486645.1_ASM348664v1

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Seq: DNGI01000058.1 TPA_asm: Cyanobacteria bacterium UBA11370 contig_1463, whole genome shotgun sequence (16846 bp)
Overview 1 RT 1: 11223-16809 bp Neighborhood of RT #1 [11223, 16820] DUF820 Cas1_I-II-III RVT-CRISPR Csx3_III-U Csx3_III-U 23S_rRNA_IVP_like Feature: gene Location: 11223-11777 bp Feature: domain Description: DUF820 Location: 11292-11736 bp Feature: domain Description: DUF820 Location: 1 1 292-1 1 736 bp Feature: gene Location: 11920-12924 bp Feature: domain Description: Cas1_I-II-III Location: 11932-12886 bp Feature: domain Description: Cas1 _I-II-III Location: 1 1 932-1 2886 bp Feature: gene Location: 13188-14216 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13443-14049 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 3443-1 4049 bp Feature: gene Location: 14944-16239 bp Feature: domain Description: Csx3_III-U Location: 15121-15238 bp Feature: domain Description: Csx3_III-U Location: 1 51 21 -1 5238 bp Feature: domain Description: Csx3_III-U Location: 15472-15643 bp Feature: domain Description: Csx3_III-U Location: 1 5472-1 5643 bp Feature: gene Location: 16449-16820 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 16488-16809 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 1 6488-1 6809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, Cas1_I-II-III (cl00656), RVT-CRISPR, Csx3_III-U (cl09837), 23S_rRNA_IVP_like (cd16377)

Seq: DNGI01000521.1 TPA_asm: Cyanobacteria bacterium UBA11370 contig_417, whole genome shotgun sequence (12373 bp)
Overview 1 RT 1: 135-2683 bp Neighborhood of RT #1 [135, 2683] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 135-1883 bp Feature: domain Description: RVT_N Location: 168-414 bp Feature: domain Description: RVT_N Location: 168-414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1119 bp Feature: domain Description: GIIM Note: maturase Location: 1221-1458 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 1-1458 bp Feature: domain Description: HNHc Note: nucleases Location: 1647-1800 bp Feature: domain Description: HNHc Note: nucleases Location: 1647-1800 bp Feature: gene Location: 2326-2478 bp Feature: gene Location: 2483-2683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DNGI01000227.1 TPA_asm: Cyanobacteria bacterium UBA11370 contig_68, whole genome shotgun sequence (45395 bp)
Overview 1 RT 1: 9092-13569 bp Neighborhood of RT #1 [9092, 13569] COG5635 COG5635 RVT-CRISPR Cas1_I-II-III Feature: gene Location: 9092-9652 bp Feature: domain Description: COG5635 Location: 9095-9305 bp Feature: domain Description: COG563 5 Location: 9095-93 05 bp Feature: domain Description: COG5635 Location: 9569-9611 bp Feature: domain Description: COG563 5 Location: 9569-9611 bp Feature: gene Location: 10010-10141 bp Feature: gene Location: 10301-12304 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10490-11099 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10490-11099 bp Feature: domain Description: Cas1_I-II-III Location: 11309-12266 bp Feature: domain Description: Cas1_I-II-III Location: 113 09-12266 bp Feature: gene Location: 12510-12950 bp Feature: gene Location: 13252-13569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), RVT-CRISPR, Cas1_I-II-III (cl00656)