myRT

myRT report for GCA_003486675.1_ASM348667v1

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Seq: DNGG01000383.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_1446, whole genome shotgun sequence (12271 bp)
Overview 1 RT 1: 4152-8603 bp Neighborhood of RT #1 [4152, 8659] RVT-Retrons YjbI TPR SprT Feature: gene Location: 4152-4442 bp Feature: gene Location: 4518-4646 bp Feature: gene Location: 4761-6173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5313-5931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 531 3-5931 bp Feature: gene Location: 6553-7344 bp Feature: domain Description: YjbI Location: 6598-6958 bp Feature: domain Description: YjbI Location: 6598-6958 bp Feature: domain Description: TPR Location: 6991-7168 bp Feature: domain Description: TPR Location: 6991 -71 68 bp Feature: gene Location: 7475-8659 bp Feature: domain Description: SprT Location: 8324-8603 bp Feature: domain Description: SprT Location: 8324-8603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YjbI (COG2346), TPR (smart00028), SprT (smart00731)

Seq: DNGG01000493.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_1799, whole genome shotgun sequence (15026 bp)
Overview 1 RT 1: 12522-15013 bp Neighborhood of RT #1 [12522, 15024] COG3548 Tas RVT_N RVT-GII Feature: gene Location: 12522-13166 bp Feature: domain Description: COG3548 Location: 12528-13098 bp Feature: domain Description: COG3548 Location: 12 52 8-13098 bp Feature: gene Location: 13225-13416 bp Feature: domain Description: Tas Location: 13228-13372 bp Feature: domain Description: Tas Location: 132 2 8-13372 bp Feature: gene Location: 14155-15024 bp Feature: RT Description: RVT_N Location: 14209-14452 bp Feature: RT Description: RVT_N Location: 142 09-14452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14503-15013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14503-15013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3548 (Uncharacterized membrane protein ), Tas (COG0667), RVT_N (pfam13655), RVT-GII

Seq: DNGG01000073.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_1867, whole genome shotgun sequence (27690 bp)
Overview 1 RT 1: 8063-13524 bp Neighborhood of RT #1 [8063, 13526] Mo-nitro_C YjbI RVT_N RVT-GII GIIM HNHc Macro_Poa1p_like YwgA DarT Feature: gene Location: 8063-8377 bp Feature: domain Description: Mo-nitro_C Location: 8132-8375 bp Feature: domain Description: Mo-nitro_C Location: 813 2-83 75 bp Feature: gene Location: 8789-9259 bp Feature: domain Description: YjbI Location: 8837-9191 bp Feature: domain Description: YjbI Location: 883 7-9191 bp Feature: gene Location: 9385-11043 bp Feature: RT Description: RVT_N Location: 9424-9664 bp Feature: RT Description: RVT_N Location: 9424-9664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9718-10357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9718-103 57 bp Feature: domain Description: GIIM Note: maturase Location: 10429-10663 bp Feature: domain Description: GIIM Note: maturase Location: 10429-10663 bp Feature: domain Description: HNHc Note: nucleases Location: 10804-11026 bp Feature: domain Description: HNHc Note: nucleases Location: 10804-11026 bp Feature: gene Location: 11813-12856 bp Feature: domain Description: Macro_Poa1p_like Location: 11816-12227 bp Feature: domain Description: Macro_Poa1p_like Location: 11816-12227 bp Feature: domain Description: YwgA Location: 12380-12494 bp Feature: domain Description: YwgA Location: 123 80-12494 bp Feature: gene Location: 12900-13526 bp Feature: domain Description: DarT Location: 12915-13524 bp Feature: domain Description: DarT Location: 12915-13 524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Poa1p_like, YwgA (COG3465), DarT, Mo-nitro_C (pfam06967), YjbI (COG2346), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DNGG01000475.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_2468, whole genome shotgun sequence (26999 bp)
Overview 1 RT 1: 15150-23240 bp Neighborhood of RT #1 [15150, 23302] arc_metj InsQ RVT_N RVT-GII YkfC HNHc RVT_N RVT-GII GIIM HNH Acyl_transf_3 Feature: gene Location: 15150-15302 bp Feature: domain Description: arc_metj Location: 15165-15270 bp Feature: domain Description: arc_metj Location: 15165-15270 bp Feature: gene Location: 15360-16550 bp Feature: domain Description: InsQ Location: 15381-16467 bp Feature: domain Description: InsQ Location: 15381-164 67 bp Feature: gene Location: 17101-18993 bp Feature: RT Description: RVT_N Location: 17134-17371 bp Feature: RT Description: RVT_N Location: 17134 -17371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17422-18121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174 22-18121 bp Feature: domain Description: YkfC Location: 18289-18481 bp Feature: domain Description: YkfC Location: 18289-184 81 bp Feature: domain Description: HNHc Note: nucleases Location: 18649-18799 bp Feature: domain Description: HNHc Note: nucleases Location: 1864 9-18799 bp Feature: gene Location: 19017-19295 bp Feature: gene Location: 19828-21666 bp Feature: RT Description: RVT_N Location: 19951-20197 bp Feature: RT Description: RVT_N Location: 19951-20197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20239-20917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20239-20917 bp Feature: domain Description: GIIM Note: maturase Location: 21028-21250 bp Feature: domain Description: GIIM Note: maturase Location: 21028-21250 bp Feature: domain Description: HNH Note: nucleases Location: 21463-21601 bp Feature: domain Description: HNH Note: nucleases Location: 214 63-21601 bp Feature: gene Location: 21858-21986 bp Feature: gene Location: 22109-23302 bp Feature: domain Description: Acyl_transf_3 Location: 22193-23240 bp Feature: domain Description: Acyl_transf_3 Location: 22193-2324 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), GIIM (pfam08388), HNH (pfam01844), Acyl_transf_3 (pfam01757)

Seq: DNGG01000019.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_3136, whole genome shotgun sequence (15231 bp)
Overview 1 RT 1: 9528-14989 bp Neighborhood of RT #1 [9528, 14989] stp1 DUF2396 RVT_N RVT-GII GIIM HNH Feature: gene Location: 9528-10832 bp Feature: domain Description: stp1 Location: 9609-10809 bp Feature: domain Description: stp1 Location: 9609-10809 bp Feature: gene Location: 11919-12422 bp Feature: domain Description: DUF2396 Location: 11988-12189 bp Feature: domain Description: DUF2396 Location: 11988-12189 bp Feature: gene Location: 12588-14369 bp Feature: RT Description: RVT_N Location: 12624-12870 bp Feature: RT Description: RVT_N Location: 12624-12870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12912-13593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12912-135 93 bp Feature: domain Description: GIIM Note: maturase Location: 13692-13926 bp Feature: domain Description: GIIM Note: maturase Location: 13692-13926 bp Feature: domain Description: HNH Note: nucleases Location: 14148-14283 bp Feature: domain Description: HNH Note: nucleases Location: 14148-14283 bp Feature: gene Location: 14798-14989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2396 (pfam09654), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), stp1 (TIGR03087)

Seq: DNGG01000350.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_360, whole genome shotgun sequence (17417 bp)
Overview 1 RT 1: 15459-17394 bp Neighborhood of RT #1 [15459, 17414] RVT-GII GIIM HNH Feature: gene Location: 15459-15725 bp Feature: gene Location: 16223-16594 bp Feature: gene Location: 16518-17414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16536-16701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 536 -16 701 bp Feature: domain Description: GIIM Note: maturase Location: 16803-17034 bp Feature: domain Description: GIIM Note: maturase Location: 16 803-17034 bp Feature: domain Description: HNH Note: nucleases Location: 17259-17394 bp Feature: domain Description: HNH Note: nucleases Location: 17259-17394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: DNGG01000111.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_650, whole genome shotgun sequence (7618 bp)
Overview 1 RT 1: 843-5122 bp Neighborhood of RT #1 [843, 5151] InsQ RVT_N RVT-GII GIIM McrA RVT_N InsQ Feature: gene Location: 843-1025 bp Feature: gene Location: 1064-1855 bp Feature: domain Description: InsQ Location: 1094-1715 bp Feature: domain Description: InsQ Location: 1094-17 15 bp Feature: gene Location: 1957-3690 bp Feature: RT Description: RVT_N Location: 1960-2089 bp Feature: RT Description: RVT_N Location: 1960-2089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2131-2827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2131-2827 bp Feature: domain Description: GIIM Note: maturase Location: 2932-3163 bp Feature: domain Description: GIIM Note: maturase Location: 2932-3163 bp Feature: domain Description: McrA Location: 3271-3559 bp Feature: domain Description: McrA Location: 327 1-3559 bp Feature: gene Location: 3745-3888 bp Feature: RT Description: RVT_N Location: 3829-3886 bp Feature: RT Description: RVT_N Location: 3829-3886 bp Feature: gene Location: 4555-5151 bp Feature: domain Description: InsQ Location: 4561-5122 bp Feature: domain Description: InsQ Location: 4561-5122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DNGG01000285.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_977, whole genome shotgun sequence (23612 bp)
Overview 1 RT 1: 18826-22941 bp Neighborhood of RT #1 [18826, 22955] InsQ RVT_N RVT-GII GIIM HNH tspaseT_teng_N InsQ Feature: gene Location: 18826-19005 bp Feature: gene Location: 19086-19883 bp Feature: domain Description: InsQ Location: 19227-19758 bp Feature: domain Description: InsQ Location: 19227-19758 bp Feature: gene Location: 19876-21813 bp Feature: RT Description: RVT_N Location: 19924-20170 bp Feature: RT Description: RVT_N Location: 19924-20170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20212-20896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20212-208 96 bp Feature: domain Description: GIIM Note: maturase Location: 21001-21232 bp Feature: domain Description: GIIM Note: maturase Location: 21001-21232 bp Feature: domain Description: HNH Note: nucleases Location: 21457-21592 bp Feature: domain Description: HNH Note: nucleases Location: 21457-21592 bp Feature: gene Location: 21987-22184 bp Feature: gene Location: 22389-22955 bp Feature: domain Description: tspaseT_teng_N Location: 22407-22614 bp Feature: domain Description: tspaseT_teng_N Location: 22407-22614 bp Feature: domain Description: InsQ Location: 22620-22941 bp Feature: domain Description: InsQ Location: 22620-22941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), tspaseT_teng_N (TIGR01765)

Seq: DNGG01000122.1 TPA_asm: Cyanobacteria bacterium UBA11372 contig_988, whole genome shotgun sequence (30937 bp)
Overview 1 RT 1: 22253-26557 bp Neighborhood of RT #1 [22253, 26557] RAYT RVT-GII GIIM HNHc COG2343 Feature: gene Location: 22253-22465 bp Feature: domain Description: RAYT Location: 22274-22451 bp Feature: domain Description: RAYT Location: 22274-22451 bp Feature: gene Location: 23067-23279 bp Feature: gene Location: 23446-24807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23449-24103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23449 -24103 bp Feature: domain Description: GIIM Note: maturase Location: 24181-24406 bp Feature: domain Description: GIIM Note: maturase Location: 24181-24406 bp Feature: domain Description: HNHc Note: nucleases Location: 24607-24745 bp Feature: domain Description: HNHc Note: nucleases Location: 24607-24745 bp Feature: gene Location: 25993-26277 bp Feature: domain Description: COG2343 Location: 25999-26272 bp Feature: domain Description: COG2343 Location: 259 9 9 -26272 bp Feature: gene Location: 26282-26557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG2343 (Uncharacterized conserved protein, DUF427 family )