myRT

myRT report for GCA_003486705.1_ASM348670v1

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Seq: DNGE01000122.1 TPA_asm: Firmicutes bacterium isolate UBA11379 contig_13572, whole genome shotgun sequence (4493 bp)
Overview 1 RT 1: 206-3625 bp Neighborhood of RT #1 [206, 3625] L1-EN RVT-UNC RT_nLTR_like Feature: gene Location: 206-490 bp Feature: gene Location: 931-1758 bp Feature: domain Description: L1-EN Location: 1060-1522 bp Feature: domain Description: L1 -EN Location: 1 060-1 522 bp Feature: gene Location: 2305-2946 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2605-2773 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2605-2773 bp Feature: domain Description: RT_nLTR_like Location: 2794-2938 bp Feature: domain Description: RT_nLTR_like Location: 2794-2938 bp Feature: gene Location: 3092-3625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-CRISPR/RVT-GII/RVT-UG23(RVT-UNC), RT_nLTR_like (cd01650)

Seq: DNGE01000008.1 TPA_asm: Firmicutes bacterium isolate UBA11379 contig_253503, whole genome shotgun sequence (54859 bp)
Overview 1 RT 1: 51626-54566 bp Neighborhood of RT #1 [51626, 54856] MgtE COG5418 RVT-GII Intron_maturas2 Feature: gene Location: 51626-52969 bp Feature: domain Description: MgtE Location: 51686-52961 bp Feature: domain Description: MgtE Location: 51686-52 961 bp Feature: gene Location: 53001-53621 bp Feature: domain Description: COG5418 Location: 53025-53349 bp Feature: domain Description: COG5418 Location: 5302 5-53349 bp Feature: gene Location: 53780-54856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53783-54179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53783-54179 bp Feature: domain Description: Intron_maturas2 Location: 54197-54566 bp Feature: domain Description: Intron_maturas2 Location: 54197-54566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MgtE (pfam01769), COG5418 (Predicted secreted protein ), RVT-GII, Intron_maturas2 (pfam01348)