myRT

myRT report for GCA_003489025.1_ASM348902v1

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Seq: DNJR01000290.1 TPA_asm: Alteromonas macleodii isolate UBA8168 contig_14034, whole genome shotgun sequence (23343 bp)
Overview 1 RT 1: 11488-14612 bp Neighborhood of RT #1 [11488, 14612] HTH_XRE RVT-Retrons MAPEG Feature: gene Location: 11488-11697 bp Feature: gene Location: 11756-12037 bp Feature: domain Description: HTH_XRE Location: 11771-11936 bp Feature: domain Description: HTH_XRE Location: 1 1 771 -1 1 936 bp Feature: gene Location: 12024-13157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12177-12747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 21 77-1 2747 bp Feature: gene Location: 13557-14096 bp Feature: domain Description: MAPEG Location: 13707-14061 bp Feature: domain Description: MAPEG Location: 1 3707-1 4061 bp Feature: gene Location: 14097-14612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, MAPEG (pfam01124)

Seq: DNJR01000458.1 TPA_asm: Alteromonas macleodii isolate UBA8168 contig_164074, whole genome shotgun sequence (5820 bp)
Overview 1 RT 1: 2346-5666 bp Neighborhood of RT #1 [2346, 5666] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2346-2543 bp Feature: gene Location: 2756-3049 bp Feature: gene Location: 3065-4723 bp Feature: RT Description: RVT_N Location: 3116-3359 bp Feature: RT Description: RVT_N Location: 3116-3359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404-4049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404-4049 bp Feature: domain Description: GIIM Note: maturase Location: 4103-4334 bp Feature: domain Description: GIIM Note: maturase Location: 4103-4334 bp Feature: domain Description: HNHc Note: nucleases Location: 4550-4706 bp Feature: domain Description: HNHc Note: nucleases Location: 4550-4706 bp Feature: gene Location: 5048-5188 bp Feature: gene Location: 5535-5666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DNJR01000351.1 TPA_asm: Alteromonas macleodii isolate UBA8168 contig_79719, whole genome shotgun sequence (12105 bp)
Overview 1 RT 1: 8419-11518 bp Neighborhood of RT #1 [8419, 12090] PRK14727 RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 8419-8817 bp Feature: domain Description: PRK14727 Location: 8425-8812 bp Feature: domain Description: PRK14727 Location: 8425-8812 bp Feature: gene Location: 9118-9246 bp Feature: gene Location: 9624-10769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9891-10464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9891-10464 bp Feature: gene Location: 10774-12090 bp Feature: domain Description: AAA_15 Location: 10777-11008 bp Feature: domain Description: AAA_15 Location: 10777-11008 bp Feature: domain Description: AAA_15 Location: 11152-11518 bp Feature: domain Description: AAA_15 Location: 11152-11518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), PRK14727 (putative mercuric reductase; Provisional), RVT-Retrons