myRT

myRT report for GCA_003490035.1_ASM349003v1

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Seq: DNJA01000297.1 TPA_asm: Deltaproteobacteria bacterium isolate UBA9968 contig_28164, whole genome shotgun sequence (9657 bp)
Overview 1 RT 1: 1484-5585 bp Neighborhood of RT #1 [1484, 5593] RVT-Retrons COG3636 upstrm_HI1419 Feature: gene Location: 1484-1780 bp Feature: gene Location: 2141-2794 bp Feature: gene Location: 3277-4278 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3511-4057 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 351 1 -4057 bp Feature: gene Location: 4589-5257 bp Feature: domain Description: COG3636 Location: 4625-4880 bp Feature: domain Description: COG3636 Location: 4625-4880 bp Feature: gene Location: 5267-5593 bp Feature: domain Description: upstrm_HI1419 Location: 5318-5585 bp Feature: domain Description: upstrm_HI1 41 9 Location: 531 8-5585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3636 (DNA-binding prophage protein ), upstrm_HI1419 (TIGR02683)

Seq: DNJA01000053.1 TPA_asm: Deltaproteobacteria bacterium isolate UBA9968 contig_8555, whole genome shotgun sequence (9154 bp)
Overview 1 RT 1: 1819-5481 bp Neighborhood of RT #1 [1819, 5483] MarR HsdR RVT-UNC DarT Feature: gene Location: 1819-2271 bp Feature: domain Description: MarR Location: 1906-2248 bp Feature: domain Description: MarR Location: 1906-2 2 48 bp Feature: gene Location: 2488-2994 bp Feature: domain Description: HsdR Location: 2497-2839 bp Feature: domain Description: HsdR Location: 2 497-2 839 bp Feature: gene Location: 3007-4644 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3250-3880 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 32 50-3880 bp Feature: gene Location: 4648-4830 bp Feature: gene Location: 4839-5483 bp Feature: domain Description: DarT Location: 4869-5481 bp Feature: domain Description: DarT Location: 4869-5481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), HsdR (COG4096), RVT-UG3/RVT-UG19/RVT-CRISPR/RVT-UG9(RVT-UNC), DarT