myRT

myRT report for GCA_003491465.1_ASM349146v1

Download annotations/find similar RTs

Seq: DNDY01000142.1 TPA_asm: Marinobacter hydrocarbonoclasticus isolate UBA8738 contig_126428, whole genome shotgun sequence (3284 bp)
Overview 1 RT 1: 508-3116 bp Neighborhood of RT #1 [508, 3283] GstA MhpC RVT-GII GIIM Feature: gene Location: 508-1152 bp Feature: domain Description: GstA Location: 514-1123 bp Feature: domain Description: GstA Location: 51 4-1 1 23 bp Feature: gene Location: 1228-2097 bp Feature: domain Description: MhpC Location: 1252-2059 bp Feature: domain Description: MhpC Location: 1 252-2059 bp Feature: gene Location: 2276-3283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279-2837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279-2837 bp Feature: domain Description: GIIM Note: maturase Location: 2885-3116 bp Feature: domain Description: GIIM Note: maturase Location: 2885-31 1 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MhpC (COG0596), RVT-GII, GIIM (pfam08388), GstA (COG0625)

Seq: DNDY01000311.1 TPA_asm: Marinobacter hydrocarbonoclasticus isolate UBA8738 contig_50696, whole genome shotgun sequence (11120 bp)
Overview 1 RT 1: 8292-11119 bp Neighborhood of RT #1 [8292, 11118] CCDC158 RVT-GII GIIM Feature: gene Location: 8292-9488 bp Feature: domain Description: CCDC158 Location: 8808-9036 bp Feature: domain Description: CCDC158 Location: 8808-9036 bp Feature: gene Location: 9638-9901 bp Feature: gene Location: 9970-11118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10264-10882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 64-10882 bp Feature: domain Description: GIIM Note: maturase Location: 10930-11119 bp Feature: domain Description: GIIM Note: maturase Location: 10930-11119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CCDC158 (pfam15921), RVT-GII, GIIM (pfam08388)

Seq: DNDY01000128.1 TPA_asm: Marinobacter hydrocarbonoclasticus isolate UBA8738 contig_70141, whole genome shotgun sequence (14152 bp)
Overview 1 RT 1: 1-2635 bp Neighborhood of RT #1 [1, 2691] RVT-GII GIIM PRK03573 Tra5 Feature: gene Location: 1-1092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58-673 bp Feature: domain Description: GIIM Note: maturase Location: 730-955 bp Feature: domain Description: GIIM Note: maturase Location: 73 0-955 bp Feature: gene Location: 1328-1774 bp Feature: domain Description: PRK03573 Location: 1373-1766 bp Feature: domain Description: PRK03 573 Location: 13 73 -1766 bp Feature: gene Location: 1957-2691 bp Feature: domain Description: Tra5 Location: 1966-2635 bp Feature: domain Description: Tra5 Location: 1966-263 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK03573 (transcriptional regulator SlyA; Provisional), Tra5 (COG2801)