myRT

myRT report for GCA_003497525.1_ASM349752v1

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Seq: DNNR01000174.1 TPA_asm: Spirochaetia bacterium isolate UBA12132 contig_1396, whole genome shotgun sequence (11373 bp)
Overview 1 RT 1: 184-2796 bp Neighborhood of RT #1 [184, 2885] RVT-Retrons zinc_ribbon_2 zinc_ribbon_2 zinc_ribbon_2 zinc_ribbon_2 DUF2628 Feature: gene Location: 184-1143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 316-859 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 6-859 bp Feature: gene Location: 1296-2075 bp Feature: domain Description: zinc_ribbon_2 Location: 1314-1371 bp Feature: domain Description: zinc_ribbon_2 Location: 1 31 4-1 371 bp Feature: domain Description: zinc_ribbon_2 Location: 1413-1473 bp Feature: domain Description: zinc_ribbon_2 Location: 1 41 3-1 473 bp Feature: gene Location: 2079-2885 bp Feature: domain Description: zinc_ribbon_2 Location: 2325-2385 bp Feature: domain Description: zinc_ribbon_2 Location: 2325-2385 bp Feature: domain Description: zinc_ribbon_2 Location: 2403-2472 bp Feature: domain Description: zinc_ribbon_2 Location: 2403-2472 bp Feature: domain Description: DUF2628 Location: 2580-2796 bp Feature: domain Description: DUF2628 Location: 2580-2796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, zinc_ribbon_2 (pfam13240), DUF2628 (pfam10947)

Seq: DNNR01000101.1 TPA_asm: Spirochaetia bacterium isolate UBA12132 contig_3810, whole genome shotgun sequence (78946 bp)
Overview 1 RT 1: 305-6799 bp Neighborhood of RT #1 [305, 6799] RVT-GII GIIM CHB_HEX_C_1 FIVAR FIVAR Flg_new Flg_new Flg_new Feature: gene Location: 305-1249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311-881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311-881 bp Feature: domain Description: GIIM Note: maturase Location: 953-1166 bp Feature: domain Description: GIIM Note: maturase Location: 953-1166 bp Feature: gene Location: 1735-4608 bp Feature: domain Description: CHB_HEX_C_1 Location: 1861-2056 bp Feature: domain Description: CHB_HEX_C_1 Location: 1861-2 056 bp Feature: domain Description: FIVAR Location: 2098-2239 bp Feature: domain Description: FIVAR Location: 2 098-2 2 39 bp Feature: domain Description: FIVAR Location: 2287-2458 bp Feature: domain Description: FIVAR Location: 2 2 87-2 458 bp Feature: domain Description: Flg_new Location: 2470-2680 bp Feature: domain Description: Flg_new Location: 2 470-2 680 bp Feature: domain Description: Flg_new Location: 2701-2896 bp Feature: domain Description: Flg_new Location: 2 701-2 896 bp Feature: domain Description: Flg_new Location: 2914-3070 bp Feature: domain Description: Flg_new Location: 2 914-3070 bp Feature: gene Location: 5018-6799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CHB_HEX_C_1 (pfam13290), FIVAR (pfam07554), Flg_new (pfam09479)

Seq: DNNR01000170.1 TPA_asm: Spirochaetia bacterium isolate UBA12132 contig_989, whole genome shotgun sequence (47258 bp)
Overview 1 RT 1: 445-4627 bp Neighborhood of RT #1 [445, 4704] polC_Gram_pos SLATT_5 RVT-UG17 GrpB DUF4300 Feature: gene Location: 445-1029 bp Feature: domain Description: polC_Gram_pos Location: 454-994 bp Feature: domain Description: polC_Gram_pos Location: 454-994 bp Feature: gene Location: 1026-1628 bp Feature: domain Description: SLATT_5 Location: 1044-1581 bp Feature: domain Description: SLATT_5 Location: 1044-1581 bp Feature: gene Location: 1641-2990 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1875-2463 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1875-2463 bp Feature: gene Location: 3377-3946 bp Feature: domain Description: GrpB Location: 3383-3863 bp Feature: domain Description: GrpB Location: 3 3 83 -3 863 bp Feature: gene Location: 3940-4704 bp Feature: domain Description: DUF4300 Location: 4054-4627 bp Feature: domain Description: DUF43 00 Location: 4054-4627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT polC_Gram_pos (TIGR01405), SLATT_5 (pfam18160), RVT-UG17, GrpB (pfam04229), DUF4300 (pfam14133)