myRT

myRT report for GCA_003499925.1_ASM349992v1

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Seq: DNRQ01000088.1 TPA_asm: Geobacter sp. isolate UBA9976 contig_17183, whole genome shotgun sequence (36994 bp)
Overview 1 RT 1: 6571-10453 bp Neighborhood of RT #1 [6571, 10453] RVT_N RVT-GII GIIM Feature: gene Location: 6571-6936 bp Feature: gene Location: 7313-7516 bp Feature: gene Location: 7530-9011 bp Feature: RT Description: RVT_N Location: 7584-7827 bp Feature: RT Description: RVT_N Location: 7584-7827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7872-8496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7872-8496 bp Feature: domain Description: GIIM Note: maturase Location: 8547-8781 bp Feature: domain Description: GIIM Note: maturase Location: 8547-8781 bp Feature: gene Location: 9289-9492 bp Feature: gene Location: 10010-10453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DNRQ01000195.1 TPA_asm: Geobacter sp. isolate UBA9976 contig_23877, whole genome shotgun sequence (55833 bp)
Overview 1 RT 1: 44380-47913 bp Neighborhood of RT #1 [44380, 48323] RVT-DGRs Avd_like YfmG Feature: gene Location: 44380-45318 bp Feature: gene Location: 45312-45494 bp Feature: gene Location: 45625-46677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45838-46450 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45838-46450 bp Feature: gene Location: 46960-47298 bp Feature: domain Description: Avd_like Location: 46984-47284 bp Feature: domain Description: Avd_like Location: 46984-472 84 bp Feature: gene Location: 47346-48323 bp Feature: domain Description: YfmG Location: 47604-47913 bp Feature: domain Description: YfmG Location: 47604-47913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: DNRQ01000200.1 TPA_asm: Geobacter sp. isolate UBA9976 contig_25407, whole genome shotgun sequence (21522 bp)
Overview 1 RT 1: 7534-14568 bp Neighborhood of RT #1 [7534, 14579] DUF2281 DUF1566 CarboxypepD_reg LCAT FN3 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 7534-7758 bp Feature: domain Description: DUF2281 Location: 7552-7636 bp Feature: domain Description: DUF2281 Location: 7552-763 6 bp Feature: gene Location: 8132-11731 bp Feature: domain Description: DUF1566 Location: 8327-8726 bp Feature: domain Description: DUF1566 Location: 83 27-8726 bp Feature: domain Description: CarboxypepD_reg Location: 9056-9281 bp Feature: domain Description: CarboxypepD_reg Location: 9056-9281 bp Feature: domain Description: LCAT Location: 9467-9779 bp Feature: domain Description: LCAT Location: 9467-9779 bp Feature: domain Description: FN3 Location: 10796-11048 bp Feature: domain Description: FN3 Location: 10796-11048 bp Feature: gene Location: 11767-13137 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12031-12805 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1203 1-12805 bp Feature: gene Location: 13394-13699 bp Feature: domain Description: Avd_like Location: 13400-13679 bp Feature: domain Description: Avd_like Location: 13 400-13 679 bp Feature: gene Location: 13881-14579 bp Feature: domain Description: DUF1566 Location: 14166-14568 bp Feature: domain Description: DUF1566 Location: 14166-14568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), DUF2281 (pfam10047), CarboxypepD_reg (pfam13620), LCAT (pfam02450), FN3 (smart00060)

Seq: DNRQ01000011.1 TPA_asm: Geobacter sp. isolate UBA9976 contig_4978, whole genome shotgun sequence (45095 bp)
Overview 1 RT 1: 2543-8772 bp Neighborhood of RT #1 [2543, 8777] DUF72 Phage_holin_4_2 RVT-GII IOR_alpha PRK06853 Feature: gene Location: 2543-3427 bp Feature: domain Description: DUF72 Location: 2618-3419 bp Feature: domain Description: DUF72 Location: 2618-34 19 bp Feature: gene Location: 3440-3775 bp Feature: domain Description: Phage_holin_4_2 Location: 3443-3752 bp Feature: domain Description: Phage_holin_4 _2 Location: 34 4 3-3752 bp Feature: gene Location: 4083-5519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4485-5172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 85-5172 bp Feature: gene Location: 6445-8199 bp Feature: domain Description: IOR_alpha Location: 6448-8185 bp Feature: domain Description: IOR_alpha Location: 64 4 8-8185 bp Feature: gene Location: 8196-8777 bp Feature: domain Description: PRK06853 Location: 8208-8772 bp Feature: domain Description: PRK06853 Location: 8208-8772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF72 (pfam01904), Phage_holin_4_2 (pfam04020), RVT-GII, IOR_alpha (TIGR03336), PRK06853 (indolepyruvate oxidoreductase subunit beta; Reviewed)

Seq: DNRQ01000172.1 TPA_asm: Geobacter sp. isolate UBA9976 contig_52417, whole genome shotgun sequence (9956 bp)
Overview 1 RT 1: 7960-9952 bp Neighborhood of RT #1 [7960, 9954] PRK00215 RVT-GII Feature: gene Location: 7960-8583 bp Feature: domain Description: PRK00215 Location: 7966-8548 bp Feature: domain Description: PRK00215 Location: 7966-85 48 bp Feature: gene Location: 8859-9059 bp Feature: gene Location: 9553-9954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9859-9952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985 9-995 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00215 (transcriptional repressor LexA), RVT-GII